BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	257908	258683	776	104 [0]	[0] 107	insB9–[crl]	insB9,insA9,[crl]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 257907	0 (0.000)	84 (1.140)	47/82	0.0	100%	intergenic (+8/+16)	crl/insB9	RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B
*	?	NC_000913	258684 =	0 (0.000)	84 (1.140)	47/82	0.0	100%	pseudogene (9/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl

Only 100 of 107 total aligned reads displayed.

ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAC  >  NC_000913/258636‑258733

gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg                                                  <  1:4527288‑M2/2‑1 (MQ=255)

  ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                >  1:3584120‑M2/47‑50 (MQ=255)

  ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                >  1:779221‑M2/47‑50 (MQ=255)

  ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                <  1:2488004‑M2/4‑1 (MQ=255)

  ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                <  1:4489599‑M2/4‑1 (MQ=255)

   tgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                >  1:1933962‑M2/46‑49 (MQ=255)

    gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               >  1:117117‑M2/45‑49 (MQ=255)

    gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               <  1:1279228‑M2/5‑1 (MQ=255)

     atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa                                              >  1:4403057‑M2/44‑49 (MQ=255)

      tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa                                            <  1:4313726‑M2/8‑1 (MQ=255)

      tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa                                            <  1:4768002‑M2/8‑1 (MQ=255)

        aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg                                           <  1:3785191‑M2/9‑1 (MQ=255)

        aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa                                          <  1:5631534‑M2/10‑1 (MQ=255)

         aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa                                          >  1:1640538‑M2/40‑49 (MQ=255)

         aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa                                          >  1:5066833‑M2/40‑49 (MQ=255)

          aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa                                        <  1:3194821‑M2/12‑1 (MQ=255)

          aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGAAAAGATa                                        <  1:3490511‑M2/12‑1 (MQ=255)

            aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                      >  1:5846834‑M2/37‑50 (MQ=255)

            aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                      <  1:4006469‑M2/14‑1 (MQ=255)

            aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                      <  1:2600253‑M2/14‑1 (MQ=255)

              tttaccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                    <  1:1039982‑M2/16‑1 (MQ=255)

              tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                    <  1:4488657‑M2/16‑1 (MQ=255)

              tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                    <  1:5730975‑M2/16‑1 (MQ=255)

              tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                    <  1:2418981‑M2/16‑1 (MQ=255)

              tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                    <  1:5872421‑M2/16‑1 (MQ=255)

              tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                    <  1:6173978‑M2/16‑1 (MQ=255)

               ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa                                   >  1:3840333‑M2/34‑50 (MQ=255)

                taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAtcgca                                  >  1:5918112‑M2/33‑48 (MQ=255)

                taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa                                   <  1:5041691‑M2/17‑1 (MQ=255)

                 accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt                                 >  1:1835882‑M2/32‑50 (MQ=255)

                  ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCTATTc                                >  1:3623767‑M2/31‑50 (MQ=255)

                  ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt                                 <  1:487715‑M2/19‑1 (MQ=255)

                  ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt                                 <  1:5252807‑M2/19‑1 (MQ=255)

                  ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc                                >  1:3178894‑M2/31‑50 (MQ=255)

                  ccgcactaggcccgtatatccgtgaaggtaAGTGCAAAGATAATCGAtt                                 <  1:364922‑M2/19‑1 (MQ=255)

                   cgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt                               <  1:1604254‑M2/21‑1 (MQ=255)

                   cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt                               >  1:3987969‑M2/30‑50 (MQ=255)

                    gcactaggcccgtatattcgtgaaggtaAGTGCAATGATAATCGATTCtt                              >  1:5170219‑M2/29‑50 (MQ=255)

                    gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt                              <  1:5553412‑M2/22‑1 (MQ=255)

                    gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt                              <  1:570267‑M2/22‑1 (MQ=255)

                     cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt                             >  1:5389989‑M2/28‑50 (MQ=255)

                      actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            <  1:3957751‑M2/24‑1 (MQ=255)

                      actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            <  1:4548268‑M2/24‑1 (MQ=255)

                      actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            <  1:2507490‑M2/24‑1 (MQ=255)

                      actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            >  1:5278648‑M2/27‑50 (MQ=255)

                      actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            <  1:3013931‑M2/24‑1 (MQ=255)

                       ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                           <  1:1320895‑M2/25‑1 (MQ=255)

                       ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                           >  1:4614011‑M2/26‑50 (MQ=255)

                       ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                           <  1:4123141‑M2/25‑1 (MQ=255)

                        taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  1:6469240‑M2/25‑50 (MQ=255)

                         aggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  1:3504424‑M2/24‑49 (MQ=255)

                         aggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  1:848486‑M2/24‑49 (MQ=255)

                          ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGGTTCTTTTTCGa                        >  1:6325800‑M2/23‑50 (MQ=255)

                          ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg                         <  1:3285582‑M2/27‑1 (MQ=255)

                          ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                        <  1:4896462‑M2/28‑1 (MQ=255)

                            cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      >  1:1656867‑M2/21‑50 (MQ=255)

                             ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     <  1:2805996‑M2/31‑1 (MQ=255)

                             ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     <  1:890387‑M2/31‑1 (MQ=255)

                             ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     >  1:6530359‑M2/20‑50 (MQ=255)

                             ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     >  1:3790149‑M2/20‑50 (MQ=255)

                              cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                    >  1:2272102‑M2/19‑50 (MQ=255)

                              cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                    >  1:277853‑M2/19‑50 (MQ=255)

                              cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                    >  1:360295‑M2/19‑50 (MQ=255)

                               gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                   >  1:5912353‑M2/18‑50 (MQ=255)

                               gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                   >  1:3392611‑M2/18‑50 (MQ=255)

                                tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                  <  1:2642121‑M2/34‑1 (MQ=255)

                                tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                  >  1:6638985‑M2/17‑50 (MQ=255)

                                 atattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 >  1:3939058‑M2/16‑50 (MQ=255)

                                 atattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 >  1:4471379‑M2/16‑50 (MQ=255)

                                  tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                <  1:2205124‑M2/36‑1 (MQ=255)

                                  tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                <  1:493151‑M2/36‑1 (MQ=255)

                                  tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                <  1:1117763‑M2/36‑1 (MQ=255)

                                  tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 <  1:28010‑M2/35‑1 (MQ=255)

                                  tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 <  1:78402‑M2/35‑1 (MQ=255)

                                    ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt              <  1:3291059‑M2/38‑1 (MQ=255)

                                       gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa           <  1:3737475‑M2/41‑1 (MQ=255)

                                       gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa           <  1:5328616‑M2/41‑1 (MQ=255)

                                        tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt          <  1:6300983‑M2/42‑1 (MQ=255)

                                        tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt          <  1:4401894‑M2/42‑1 (MQ=255)

                                        tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt          <  1:3843438‑M2/42‑1 (MQ=255)

                                        tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt          <  1:1139885‑M2/42‑1 (MQ=255)

                                         gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         >  1:6245893‑M2/8‑50 (MQ=255)

                                         gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         >  1:1580502‑M2/8‑50 (MQ=255)

                                          aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         <  1:2855673‑M2/43‑1 (MQ=255)

                                          aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         <  1:3888906‑M2/43‑1 (MQ=255)

                                          aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         <  1:1014551‑M2/43‑1 (MQ=255)

                                          aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         <  1:3541825‑M2/43‑1 (MQ=255)

                                          aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         <  1:3231195‑M2/43‑1 (MQ=255)

                                          aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc        <  1:6365860‑M2/44‑1 (MQ=255)

                                           aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg       >  1:1845430‑M2/6‑50 (MQ=255)

                                           aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg       >  1:3064263‑M2/6‑50 (MQ=255)

                                            ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt      >  1:1986250‑M2/5‑50 (MQ=255)

                                            ggtaAGTGCAAAGATAAGCGATTCTTTTTCGATTGTCTGGCTGTATGCGt      <  1:3379304‑M2/46‑1 (MQ=255)

                                             gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt      >  1:4711717‑M2/4‑49 (MQ=255)

                                             gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc     <  1:1795190‑M2/47‑1 (MQ=255)

                                               aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa   >  1:4403015‑M2/2‑50 (MQ=255)

                                                aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa   <  1:3730308/49‑1 (MQ=255)

                                                aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc  <  1:1596439/50‑1 (MQ=255)

                                                aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc  <  1:2522899/50‑1 (MQ=255)

                                                aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc  >  1:2999599/1‑50 (MQ=255)

ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAC  >  NC_000913/258636‑258733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`