| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 134 [0] | [0] 133 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 128 (1.440) | 69/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
Only 100 of 133 total aligned reads displayed.
CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377269‑377366 | aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:5481714‑M2/49‑50 (MQ=255)aatcgacaggtaatcactcatacggaacagcgataaaagataaaggtgGa < 1:6315276‑M2/2‑1 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:1438209‑M2/48‑49 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:5466491‑M2/3‑1 (MQ=255) tcgacaggtaatcactcatactgaacatcgataaaagataaaggtgGATa < 1:3929788‑M2/4‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:4107050‑M2/4‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:673390‑M2/4‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:1234532‑M2/4‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 1:6697840‑M2/45‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt < 1:4415287‑M2/7‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc > 1:4591178‑M2/43‑50 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:6697044‑M2/8‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:3370949‑M2/8‑1 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg < 1:6380916‑M2/9‑1 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 1:6103440‑M2/42‑50 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt < 1:6459541‑M2/10‑1 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt < 1:5996531‑M2/10‑1 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt > 1:2329694‑M2/41‑50 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt < 1:840650‑M2/10‑1 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt > 1:1301225‑M2/41‑50 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt < 1:1079475‑M2/10‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:1409641‑M2/39‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:540701‑M2/12‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc > 1:3266341‑M2/39‑50 (MQ=255) atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg < 1:5708411‑M2/13‑1 (MQ=255) cactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:302555‑M2/35‑47 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg < 1:3126751‑M2/16‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:4910982‑M2/17‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:4961195‑M2/17‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt > 1:6255849‑M2/33‑50 (MQ=255) tcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg > 1:6657417‑M2/32‑50 (MQ=255) tcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg > 1:2993975‑M2/32‑50 (MQ=255) catactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:4897242‑M2/31‑50 (MQ=255) atactgaacagtgataaaagataaaggtgGATAAGTCGTGCGCAGATGc < 1:2334222‑M2/20‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:351900‑M2/19‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:3168142‑M2/19‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGcc > 1:2316112‑M2/30‑50 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc < 1:14392‑M2/20‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc < 1:4835747‑M2/20‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:3119115‑M2/22‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:5694953‑M2/22‑1 (MQ=255) actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt > 1:3988948‑M2/28‑49 (MQ=255) actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt > 1:1486266‑M2/28‑49 (MQ=255) actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt > 1:1727543‑M2/28‑49 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg < 1:2191180‑M2/23‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGa > 1:949864‑M2/27‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:2822670‑M2/26‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:3056341‑M2/26‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:4130746‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:746000‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:209391‑M2/24‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:4729050‑M2/24‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:548819‑M2/27‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:4216373‑M2/24‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:3698748‑M2/24‑50 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:2649911‑M2/22‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 1:933513‑M2/30‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 1:1042779‑M2/30‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:5195716‑M2/21‑50 (MQ=255) gcgataaaagatagaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg < 1:4578727‑M2/31‑1 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg > 1:1028534‑M2/20‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc < 1:4715744‑M2/32‑1 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:2811710‑M2/18‑49 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:3622602‑M2/18‑49 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:3531577‑M2/17‑50 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:6341050‑M2/17‑50 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa < 1:3259151‑M2/34‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:4529159‑M2/35‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:3604429‑M2/35‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:1757692‑M2/35‑1 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:4808841‑M2/15‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc < 1:5967830‑M2/37‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc < 1:4240357‑M2/37‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc > 1:4217774‑M2/14‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg < 1:6590216‑M2/36‑1 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc < 1:958365‑M2/39‑1 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGggcg < 1:1752579‑M2/40‑1 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt < 1:6152057‑M2/41‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:6595296‑M2/42‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:6055925‑M2/42‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc > 1:6323518‑M2/9‑50 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:86949‑M2/42‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc > 1:6124819‑M2/9‑50 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:4389513‑M2/42‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc > 1:547141‑M2/9‑50 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc > 1:4767914‑M2/9‑50 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc > 1:4810513‑M2/9‑50 (MQ=255) aaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:4898216‑M2/8‑50 (MQ=255) aaggagGATAAGGCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:5594372‑M2/7‑49 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa > 1:4967613‑M2/6‑50 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt < 1:4153711‑M2/46‑1 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:1005557‑M2/5‑50 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:4342439‑M2/4‑49 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATc < 1:3565467‑M2/47‑1 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATc < 1:5500271‑M2/47‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:756322‑M2/48‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:4003031‑M2/48‑1 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg > 1:6358170/1‑50 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg > 1:2069634/1‑50 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg < 1:796321/49‑1 (MQ=255) | CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377269‑377366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |