| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 38 [0] | [0] 38 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 38 (0.570) | 32/98 | 0.4 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509514‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 TATCCCGTCACTCTTACACCCGCGCCGGCAGGCGGTTATATGGTTTCTA > 1:3777088/1‑49 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 1:115963/1‑50 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC < 1:697842/50‑1 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC < 1:3634196/50‑1 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA < 1:1116055/49‑1 CCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC > 1:4044815/1‑49 CCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAAC > 1:4384199/1‑49 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA > 1:2436233/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAA < 1:846048/50‑1 TCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:310634/1‑50 CTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:4680420/1‑50 CTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC < 1:1106787/50‑1 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACC < 1:3038423/48‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:2417114/49‑1 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGC < 1:4660520/50‑1 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG < 1:4652853/49‑1 CCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 1:1626328/1‑49 CCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCA < 1:4689980/50‑1 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:1731458/1‑50 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG > 1:5099878/1‑50 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCA < 1:5000991/50‑1 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA > 1:3888788/1‑50 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA > 1:2547044/1‑50 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA > 1:2150368/1‑50 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:4019652/1‑50 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:454647/1‑50 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGG < 1:3173047/50‑1 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:2866436/1‑50 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG > 1:5121556/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT < 1:1653064/50‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:3498391/1‑50 ATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:968440/1‑49 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA < 1:3872585/50‑1 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT < 1:388768/50‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:4868270/1‑49 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG < 1:3850319/49‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG < 1:3399091/49‑1 TAAACAAAAACACCATTGCGCAGGCAATGGTGTCTAATCGTCATTGAGGA > 1:2492480/1‑50 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509514‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |