| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 38 [0] | [0] 38 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 38 (0.570) | 32/98 | 0.4 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509514‑1509610 | tATCCCGTCACTCTTACACCCGCGCCGGCAGGCGGTTATATGGTTTCTa > 1:3777088‑M1/1‑48 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:115963‑M1/1‑47 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac < 1:697842‑M1/50‑5 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac < 1:3634196‑M1/50‑5 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa < 1:1116055‑M1/49‑4 (MQ=255) cccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac > 1:4044815‑M1/1‑45 (MQ=255) cccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac > 1:4384199‑M1/1‑45 (MQ=255) cGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaa > 1:2436233‑M1/1‑43 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaa < 1:846048‑M1/50‑9 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 1:310634‑M1/1‑41 (MQ=255) ctctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac > 1:4680420‑M1/1‑38 (MQ=255) ctctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac < 1:1106787‑M1/50‑13 (MQ=255) ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:3038423‑M1/48‑14 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:2417114‑M1/49‑17 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 1:4660520‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg < 1:4652853‑M1/49‑18 (MQ=255) cccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:1626328‑M1/1‑30 (MQ=255) ccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgca < 1:4689980‑M1/50‑22 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcag > 1:1731458‑M1/1‑28 (MQ=255) gcgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcagg > 1:5099878‑M1/1‑27 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggca < 1:5000991‑M1/50‑26 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:3888788‑M1/1‑24 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:2547044‑M1/1‑24 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:2150368‑M1/1‑24 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:4019652‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:454647‑M1/1‑22 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg < 1:3173047‑M1/50‑30 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt > 1:2866436‑M1/1‑20 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg > 1:5121556‑M1/1‑19 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat < 1:1653064‑M1/50‑38 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:3498391‑M1/1‑10 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:968440‑M1/1‑9 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtca < 1:3872585‑M1/50‑43 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:388768‑M1/50‑45 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:4868270‑M1/1‑5 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag < 1:3850319‑M1/49‑48 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag < 1:3399091‑M1/49‑48 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgtctaatcgtcattgagga > 1:2492480‑M1/1‑1 (MQ=255) | TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509514‑1509610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |