| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 79 [0] | [0] 79 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 77 (1.200) | 53/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATC > NC_000913/2994942‑2995039 | cTGTAGATTTGTTACACACCGCTATAGCTTTCTTCAGATCTTTATAGCCC < 1:3432987‑M1/50‑1 (MQ=255) gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac > 1:3070216‑M1/1‑48 (MQ=255) aGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:5092126‑M1/1‑46 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta < 1:251344‑M1/50‑6 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta > 1:1410628‑M1/1‑45 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta < 1:3949827‑M1/50‑6 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactt < 1:293185‑M1/49‑5 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactt < 1:4325232‑M1/49‑5 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttat < 1:4293150‑M1/50‑7 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttat < 1:2149421‑M1/50‑7 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttat > 1:4370063‑M1/1‑44 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttat > 1:4833285‑M1/1‑44 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:4062842‑M1/50‑8 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt > 1:18205‑M1/1‑43 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:3857101‑M1/50‑8 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:1332665‑M1/50‑8 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt > 1:3225031‑M1/1‑43 (MQ=255) tGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattt > 1:3413587‑M1/1‑41 (MQ=255) tGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattt > 1:3230833‑M1/1‑41 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:3474173‑M1/1‑39 (MQ=255) acacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaaca < 1:3508779‑M1/49‑13 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaac < 1:2994130‑M1/50‑15 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa < 1:9747‑M1/49‑14 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa < 1:2146624‑M1/49‑14 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact > 1:3982281‑M1/1‑35 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact < 1:1875587‑M1/50‑16 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact > 1:3842595‑M1/1‑35 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact < 1:2982476‑M1/50‑16 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact < 1:3408515‑M1/50‑16 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt < 1:1023546‑M1/50‑17 (MQ=255) tCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt > 1:1150886‑M1/1‑33 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:3920909‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttga > 1:2417801‑M1/1‑31 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttga > 1:4276781‑M1/1‑31 (MQ=255) cTATAGCTTTCTTCAGATCTTTATAGCCCactgatttaacaactggaaaa < 1:4801522‑M1/50‑22 (MQ=255) ataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:2619467‑M1/1‑27 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataa < 1:1189830‑M1/50‑25 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:4949744‑M1/1‑26 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat < 1:3403636‑M1/48‑23 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCgcttatttaacaacttgaaaataag < 1:786779‑M1/49‑26 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg > 1:3306198‑M1/1‑24 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg < 1:2353567‑M1/50‑27 (MQ=255) cTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt < 1:4295953‑M1/50‑28 (MQ=255) cTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt > 1:455180‑M1/1‑23 (MQ=255) tttCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtg > 1:2947742‑M1/1‑22 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtt > 1:3945466‑M1/1‑20 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:4245740‑M1/49‑30 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtg < 1:372104‑M1/48‑29 (MQ=255) cttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttt > 1:965644‑M1/1‑19 (MQ=255) ttcAGCTCTTTATAGCCCacttatttaccaacttgaaaataaggtgttt > 1:1544549‑M1/1‑18 (MQ=255) ttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttt > 1:2082335‑M1/1‑18 (MQ=255) ttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttt > 1:3128580‑M1/1‑18 (MQ=255) cAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta < 1:4613203‑M1/49‑34 (MQ=255) cAGATCTTTATAGCCCacgtatttaacaacttgaaaataaggtgtttta < 1:1783470‑M1/49‑34 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc > 1:1652500‑M1/1‑15 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc > 1:2489960‑M1/1‑15 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttac < 1:4599867‑M1/49‑35 (MQ=255) tCTTTATAGCCCacttatttaacaacttgcaaataaggtgttttacctgg > 1:4464773‑M1/1‑12 (MQ=255) tCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctgg > 1:110049‑M1/1‑12 (MQ=255) ttttaTAGCCCacttatttaacaacttgaaaataaggtgttttacctggg > 1:2576352‑M1/2‑11 (MQ=255) cTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctggg > 1:893008‑M1/1‑11 (MQ=255) tttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggt > 1:2724613‑M1/1‑10 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctggg < 1:2303597‑M1/47‑40 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgg < 1:2705060‑M1/46‑39 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:3294427‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:746498‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:4087853‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgtttt < 1:2020079‑M1/40‑33 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttt < 1:4501940‑M1/39‑32 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttt < 1:635024‑M1/39‑32 (MQ=255) ataGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt > 1:3144017‑M1/1‑7 (MQ=255) ataGCCCactcatttaacaacttgaaaataaggtgttttacctgggttgt > 1:4898776‑M1/1‑7 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtt < 1:4415110‑M1/50‑45 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt > 1:535671‑M1/1‑6 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt < 1:2728934‑M1/49‑44 (MQ=255) gCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtta < 1:1997805‑M1/49‑46 (MQ=255) gCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtta < 1:4005710‑M1/49‑46 (MQ=255) cccacttatttaacaacttgaaaataaggtgttttacctgggttgttaca < 1:68222‑M1/50‑48 (MQ=255) cacttatttaacaacttgaaaataaggtgttttacctgggttgttacaa > 1:4150820‑M1/1‑1 (MQ=255) | CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATC > NC_000913/2994942‑2995039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |