| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 95 [0] | [0] 97 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 94 (0.960) | 66/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > NC_000913/1140988‑1141036 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT > 1:6700721/1‑50 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT > 1:4632401/1‑50 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT < 1:2696613/49‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT < 1:4627215/49‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT < 1:3900930/49‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:6318535/50‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC > 1:6186247/1‑50 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG < 1:6862257/50‑1 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG > 1:3121993/1‑50 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC < 1:2665009/50‑1 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC < 1:1275921/50‑1 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC < 1:4411906/50‑1 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT < 1:1699768/50‑1 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:6255911/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:1307262/1‑50 TTTGCCCTCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:7001184/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:3807818/1‑50 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA > 1:5348563/1‑49 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA < 1:116452/49‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:3917214/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA < 1:3035512/49‑1 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 1:3465169/1‑49 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 1:4857514/1‑49 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA < 1:6048758/50‑1 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA < 1:1546418/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT < 1:2347779/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:6533387/1‑49 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:1219556/1‑49 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA < 1:5464440/50‑1 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA > 1:3104746/1‑50 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA < 1:5897832/50‑1 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA > 1:4211441/1‑50 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA < 1:4041112/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:3766269/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:806310/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:3168701/50‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 1:4767780/50‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 1:6446606/50‑1 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA < 1:3888587/50‑1 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA > 1:3238462/1‑50 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA < 1:3216015/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:573243/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:6585446/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:6954085/1‑50 GGTGTAACAATGCATTCCGGGATGCAGTGTTCGCTTTAAAACATATCATG < 1:1167514/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG < 1:6038580/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG < 1:2538688/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:6879822/1‑49 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG > 1:6151607/1‑49 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG > 1:4997952/1‑49 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG > 1:5303661/1‑49 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAA < 1:6075753/50‑1 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA > 1:1800485/1‑49 GTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA > 1:1664907/1‑50 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC > 1:4409738/1‑50 AACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACT > 1:3913124/1‑50 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG > 1:4621955/1‑50 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACT < 1:2391559/49‑1 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG < 1:3665096/50‑1 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG < 1:5714081/50‑1 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:1871639/1‑50 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG < 1:7192855/50‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:6339021/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:2980697/1‑50 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGT < 1:6163302/50‑1 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:5181542/1‑49 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:754898/1‑49 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA > 1:7086654/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 1:2517394/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTAT < 1:2680954/49‑1 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT < 1:6927119/50‑1 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT > 1:5015344/1‑50 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT < 1:3356810/50‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT < 1:678559/50‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT < 1:3147217/50‑1 TTCCGACCTGCAGGGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT < 1:3357111/50‑1 TCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT > 1:4310412/1‑50 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT > 1:632022/1‑50 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT < 1:5747810/49‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTG < 1:4539940/50‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT < 1:1119663/49‑1 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT > 1:6814910/1‑50 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT < 1:1296528/50‑1 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTC < 1:3115503/50‑1 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:1421511/1‑50 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT < 1:1947019/50‑1 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 1:5526080/1‑50 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 1:4950133/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:6024732/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT < 1:1310271/50‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC < 1:3142212/48‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG < 1:6122510/50‑1 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > 1:7448125/1‑50 GTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > 1:7221748/1‑50 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > NC_000913/1140988‑1141036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |