| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 114 [0] | [0] 125 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 91 (1.240) +CAGATAATTCAA |
46/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 143 total aligned reads displayed.
AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197090‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |||||||||||| GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATA < 1:1054379/50‑1 GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATA < 1:1402931/50‑1 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:3107856/1‑50 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:2827230/1‑50 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT > 1:7402136/1‑50 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:7490364/1‑49 ACCTCCTGATTTTAGTATTCTCTTGATGCTAAGAACTATCAGATAATTC < 1:5928483/49‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA < 1:2728058/50‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA < 1:6818686/50‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:3834405/1‑49 CCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:1400133/1‑49 CCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:409303/1‑49 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:2795216/50‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:1538107/50‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:5277559/50‑1 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG > 1:6270458/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG < 1:4570932/50‑1 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG > 1:5487779/1‑50 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGC > 1:4538005/1‑50 TTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT > 1:7049404/1‑50 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG > 1:2304419/1‑50 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG > 1:4428312/1‑50 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG > 1:1584651/1‑50 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG > 1:3571331/1‑50 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG < 1:7280592/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:5468563/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:6589951/1‑49 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT < 1:2479406/50‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:752846/1‑50 TAATCTCTTGACGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT < 1:517556/50‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:1253899/1‑50 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:5028367/49‑1 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:4605901/1‑50 CTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:2952067/1‑49 CTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:4918477/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:894888/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:4819535/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:3498515/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:3889004/48‑1 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA > 1:5111614/1‑50 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA > 1:6238823/1‑50 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA > 1:4385537/1‑50 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:3387329/48‑1 ATGCTAAGAACTATCAGCTAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:3922086/1‑49 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:3320148/50‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:1720298/50‑1 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:2490244/1‑50 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGACAGGAATTAT > 1:1941666/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG > 1:645675/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG > 1:6303584/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG > 1:4505202/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:5978836/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:435931/49‑1 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:6681260/1‑50 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:6553026/1‑50 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:1849213/1‑50 AAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT > 1:3289269/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT > 1:4414323/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT > 1:4503129/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT < 1:1534180/50‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:812308/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT < 1:4126216/48‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT < 1:3061551/48‑1 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT > 1:7061014/1‑50 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT > 1:2649025/1‑50 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:1059881/1‑50 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:4761623/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:160013/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:4276092/1‑50 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:1343036/50‑1 ACTATCAGATAATGCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:4227070/50‑1 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA < 1:7404543/50‑1 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA < 1:3195306/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:2395997/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:3405158/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:4238224/48‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:3639750/48‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:2627171/48‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTACGTTTTTTACGT < 1:2127979/50‑1 CAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:1500369/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:4309799/1‑49 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA > 1:3553765/1‑50 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA > 1:5282810/1‑50 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:5391363/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:7195337/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:2000857/50‑1 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATG < 1:6986958/50‑1 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:2492218/1‑49 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:4343965/1‑49 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGA < 1:1828660/49‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:2753679/1‑47 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG > 1:7024709/1‑49 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:1908364/49‑1 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:6878530/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:5530984/50‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:7350438/50‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:6433504/49‑1 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > 1:5558909/1‑50 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > 1:1359316/1‑50 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA < 1:4863971/50‑1 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197090‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |