| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 52 [0] | [0] 53 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 51 (0.520) | 41/98 | 0.4 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGT > 1:685092/1‑50 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT < 1:3372826/49‑1 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT < 1:2543218/49‑1 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCCAGGCCGCTCCGTTC > 1:5480835/1‑50 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAAGCGGCTCGGTTtc > 1:4099181/1‑48 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCG > 1:352456/1‑50 AGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGGTGCCCGGTTTCGg > 1:5368155/1‑48 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAA > 1:1545419/1‑50 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:3255505/50‑1 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG > 1:5169824/1‑50 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG > 1:6030600/1‑50 GAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGTAACGT > 1:2697599/1‑50 AAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTT > 1:4527062/1‑50 AAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTT > 1:7070230/1‑50 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCTGTTTCGTAACGTT > 1:1530626/1‑49 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTA < 1:2139402/50‑1 CTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTAT < 1:4301515/50‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCAT < 1:6751313/47‑1 GAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTT > 1:7421044/1‑50 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 1:1498098/50‑1 GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT < 1:5280354/50‑1 GAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATC < 1:4906220/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC < 1:5696889/50‑1 ACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT < 1:4609982/50‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTA < 1:7227020/50‑1 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:4235525/1‑48 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA < 1:5445310/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:5163644/1‑50 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT < 1:3184769/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA > 1:7310621/1‑50 TGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTAT < 1:2914182/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:1733962/1‑50 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC < 1:2076555/49‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG < 1:745031/50‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:6346607/1‑49 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:5731517/1‑49 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA < 1:410656/50‑1 GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA > 1:860563/1‑49 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA < 1:3099519/50‑1 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA > 1:1989487/1‑49 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA > 1:1887072/1‑49 TGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:3776422/1‑50 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATA < 1:6882977/50‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:6445917/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:5393559/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:406281/49‑1 CGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 1:127680/1‑49 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTGTCCGAAAAATAATA < 1:4959843/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 1:5489525/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:6585673/50‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > 1:5560325/1‑50 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |