| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 52 [0] | [0] 53 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 51 (0.520) | 41/98 | 0.4 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997063‑1997160 | tattGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAAGCCGCCCggc > 1:6515795/1‑49 (MQ=255)tATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGt > 1:685092‑M1/1‑49 (MQ=255) ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGtt < 1:2543218‑M1/49‑3 (MQ=255) ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGtt < 1:3372826‑M1/49‑3 (MQ=255) ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCCAGGCCGCTCCGttc > 1:5480835‑M1/1‑47 (MQ=255) tGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAAGCGGCTCGGtttc > 1:4099181‑M1/1‑46 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccg > 1:352456‑M1/1‑45 (MQ=255) agcagAAACTTCTCGAGGAACTGGCGGGGGCGAGGGTGCCCGGtttcgg > 1:5368155‑M1/1‑43 (MQ=255) gcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaa > 1:1545419‑M1/1‑42 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaac < 1:3255505‑M1/50‑10 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg > 1:6030600‑M1/1‑40 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg > 1:5169824‑M1/1‑40 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGttccgtaacgt > 1:2697599‑M1/1‑39 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtt > 1:7070230‑M1/1‑38 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtt > 1:4527062‑M1/1‑38 (MQ=255) aaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCTGtttcgtaacgtt > 1:1530626‑M1/1‑37 (MQ=255) aCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttta < 1:2139402‑M1/50‑15 (MQ=255) cTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttat < 1:4301515‑M1/50‑16 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcat < 1:6751313‑M1/47‑19 (MQ=255) gAGGAACTGGCGGGGGCGAGGCTGCTCGGttccgtaacgtttatcatgtt > 1:7421044‑M1/1‑29 (MQ=255) aGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta < 1:1498098‑M1/50‑23 (MQ=255) ggAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttat < 1:5280354‑M1/50‑24 (MQ=255) gAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatc < 1:4906220‑M1/50‑25 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc < 1:5696889‑M1/50‑26 (MQ=255) aCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct < 1:4609982‑M1/50‑27 (MQ=255) cTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatccta < 1:7227020‑M1/50‑28 (MQ=255) tGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 1:4235525‑M1/1‑22 (MQ=255) cGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagga < 1:5445310‑M1/50‑32 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat > 1:5163644‑M1/1‑18 (MQ=255) ggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatt < 1:3184769‑M1/50‑34 (MQ=255) gTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatta > 1:7310621‑M1/1‑16 (MQ=255) tGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattat < 1:2914182‑M1/50‑36 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:1733962‑M1/1‑13 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatc < 1:2076555‑M1/49‑37 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg < 1:745031‑M1/50‑39 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:6346607‑M1/1‑12 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:5731517‑M1/1‑12 (MQ=255) aGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccga < 1:410656‑M1/50‑40 (MQ=255) ggCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccga > 1:860563‑M1/1‑10 (MQ=255) gctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa < 1:3099519‑M1/50‑42 (MQ=255) ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa > 1:1989487‑M1/1‑8 (MQ=255) ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa > 1:1887072‑M1/1‑8 (MQ=255) tgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa > 1:3776422‑M1/1‑7 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaata < 1:6882977‑M1/50‑46 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat < 1:6445917‑M1/49‑45 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat < 1:5393559‑M1/49‑45 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat < 1:406281‑M1/49‑45 (MQ=255) cGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa > 1:127680‑M1/1‑3 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattgtccgaaaaataata < 1:4959843‑M1/50‑49 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata > 1:5489525‑M1/1‑2 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata < 1:6585673‑M1/50‑49 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac > 1:5560325‑M1/1‑1 (MQ=255) | TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997063‑1997160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |