| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 86 [0] | [0] 89 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 82 (0.860) | 52/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756110‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791251‑2791299 ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC > 1:5572700/1‑50ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:354608/50‑1ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC > 1:2407317/1‑50 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC < 1:4775738/50‑1 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:6321282/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:7257527/1‑50 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:4202561/1‑50 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:619703/50‑1 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:5492408/1‑50 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:261280/50‑1 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:2633908/50‑1 AAAGCTCTATTGATTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:7307705/50‑1 AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA < 1:6685315/50‑1 GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA < 1:6745377/50‑1 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA < 1:4821009/48‑1 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA < 1:2596026/48‑1 ATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:5461796/1‑50 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGG < 1:6008071/50‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:6940793/1‑49 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG < 1:3141240/49‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:3369407/1‑49 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:1309721/48‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:2623662/48‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAAC < 1:4455397/47‑1 TGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA > 1:3390696/1‑50 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:2135677/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:1215201/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:6436045/1‑48 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:3715142/1‑48 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:7363130/49‑1 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:126735/49‑1 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:5348202/49‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:1165538/50‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:6137964/1‑50 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:6311017/50‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCG < 1:6986476/50‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCG < 1:4899791/50‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:4814675/1‑49 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:6334048/48‑1 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:4007271/1‑50 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:4384087/1‑50 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:4445865/1‑50 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:3723719/1‑50 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:7328264/1‑50 AAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT > 1:7214993/1‑50 AAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:921487/50‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:4217418/49‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC < 1:7172379/48‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 1:489780/50‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT > 1:7347252/1‑49 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA > 1:6563961/1‑50 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:1746488/50‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:6864259/50‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:5713120/50‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:90672/50‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG < 1:4220950/50‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG < 1:3936209/50‑1 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:84967/1‑50 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:4530343/1‑50 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC < 1:5217734/50‑1 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:7029471/1‑49 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG > 1:6970198/1‑50 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG < 1:781460/50‑1 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG > 1:2454699/1‑50 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG < 1:1679448/50‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT < 1:2772830/50‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT < 1:4824799/50‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG > 1:1057107/1‑49 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA > 1:4365742/1‑50 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA < 1:7129222/50‑1 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC < 1:3348877/50‑1 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC > 1:5621/1‑50 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC < 1:5382161/50‑1 CCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:3075870/1‑49 CCCGCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:3540737/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA < 1:317769/50‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA < 1:6871694/50‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA > 1:6321449/1‑50 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:3200572/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:5307069/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT < 1:1437001/48‑1 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT < 1:2802580/50‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:157686/50‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:404904/50‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > 1:5908839/1‑50 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:5559905/50‑1 ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756110‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791251‑2791299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |