| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 86 [0] | [0] 89 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 82 (0.860) | 52/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756110‑2756208 | aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc > 1:5572700‑M1/1‑49 (MQ=255)aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:354608‑M1/50‑2 (MQ=255)aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc > 1:2407317‑M1/1‑49 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:4775738‑M1/50‑3 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:6321282‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:7257527‑M1/1‑47 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:4202561‑M1/1‑46 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:619703‑M1/50‑6 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:5492408‑M1/1‑45 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:261280‑M1/50‑6 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:2633908‑M1/50‑6 (MQ=255) aaaGCTCTATTGATTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:7307705‑M1/50‑6 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:6685315‑M1/50‑8 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:6745377‑M1/50‑9 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa < 1:4821009‑M1/48‑11 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa < 1:2596026‑M1/48‑11 (MQ=255) aTTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:5461796‑M1/1‑37 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:6008071‑M1/50‑15 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:6940793‑M1/1‑36 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:3141240‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:3369407‑M1/1‑36 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 1:1309721‑M1/48‑13 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 1:2623662‑M1/48‑13 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaac < 1:4455397‑M1/47‑12 (MQ=255) tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga > 1:3390696‑M1/1‑35 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga < 1:2135677‑M1/49‑16 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:1215201‑M1/49‑17 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:6436045‑M1/1‑31 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:3715142‑M1/1‑31 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:7363130‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:126735‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:5348202‑M1/49‑20 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:1165538‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:6137964‑M1/1‑29 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:6311017‑M1/50‑22 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcg < 1:6986476‑M1/50‑23 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcg < 1:4899791‑M1/50‑23 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:4814675‑M1/1‑28 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:6334048‑M1/48‑27 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:4007271‑M1/1‑21 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:4384087‑M1/1‑21 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:4445865‑M1/1‑21 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:3723719‑M1/1‑21 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:7328264‑M1/1‑21 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact > 1:7214993‑M1/1‑20 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact < 1:921487‑M1/50‑31 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact < 1:4217418‑M1/49‑31 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:7172379‑M1/48‑30 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:489780‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt > 1:7347252‑M1/1‑18 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa > 1:6563961‑M1/1‑17 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:1746488‑M1/50‑34 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:6864259‑M1/50‑35 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:5713120‑M1/50‑35 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:90672‑M1/50‑35 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 1:4220950‑M1/50‑36 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 1:3936209‑M1/50‑36 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:84967‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:4530343‑M1/1‑14 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgac < 1:5217734‑M1/50‑38 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:7029471‑M1/1‑13 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:6970198‑M1/1‑11 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag < 1:781460‑M1/50‑40 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:2454699‑M1/1‑11 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag < 1:1679448‑M1/50‑40 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 1:2772830‑M1/50‑41 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 1:4824799‑M1/50‑41 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:1057107‑M1/1‑10 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:4365742‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa < 1:7129222‑M1/50‑43 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:3348877‑M1/50‑44 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac > 1:5621‑M1/1‑7 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:5382161‑M1/50‑44 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 1:3075870‑M1/1‑5 (MQ=255) cccGcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:3540737‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta < 1:317769‑M1/50‑47 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta < 1:6871694‑M1/50‑47 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta > 1:6321449‑M1/1‑4 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:3200572‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:5307069‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact < 1:1437001‑M1/48‑45 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:2802580‑M1/50‑48 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:157686‑M1/50‑50 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:404904‑M1/50‑50 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc > 1:5908839‑M1/1‑1 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:5559905‑M1/50‑50 (MQ=255) | ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756110‑2756208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |