| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 100 [0] | [0] 100 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 99 (1.010) | 58/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362114‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:3202185/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:4900840/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:3488266/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:2458175/1‑50 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:5384251/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:3743105/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:7407183/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA < 1:5265359/50‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:663750/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:2438658/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:5087090/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:6347769/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:3679761/48‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:5595252/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:5258677/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:3589099/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:1138458/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:2416223/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:2758703/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:3953832/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:442307/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:6485832/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:328661/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:6605324/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:4698561/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:1353792/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:6055951/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:1020829/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:2453866/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:501172/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:3479623/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGG < 1:6315797/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:4976415/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:4570293/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:4633840/1‑50 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:6964052/1‑49 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:4616380/49‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:4987971/50‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:6449520/50‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:855170/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:4400643/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:703960/50‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:1643544/50‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:2814446/1‑49 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:1749054/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:6192198/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:3933441/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:4276241/49‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:530994/1‑50 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:2308867/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCTGACAGGAGTACTAT > 1:7031918/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:7107943/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:3491143/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 1:2779494/49‑1 TTTATAACAACATCAATGAATGCTAACAATGCCGGACAGGAGTACTATCA < 1:1642994/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:3251078/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:1326270/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:783038/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:3754145/1‑48 TATAACAACATCAATGAATTCTAACAATGCCGGACAGGAGTACTATCAG < 1:6458008/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:5199195/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:3840877/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:4821995/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:6805094/1‑49 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:6866792/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:1505647/50‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:5363156/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:6786226/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:4642894/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:5478527/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:3493082/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:4609072/49‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:2002662/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:5203508/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:4769821/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:2055541/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:5073285/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:4363798/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:6635840/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:4505485/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:3379220/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:3228125/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:3686375/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:55813/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:769237/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:1464383/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:7453942/50‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:3598850/1‑50 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:7222421/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:901750/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:7089929/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:527616/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:5619047/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:1251043/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:766322/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:579441/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:2291407/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:2775769/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:5135325/49‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362114‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |