| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 100 [0] | [0] 100 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 99 (1.010) | 58/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367595‑3367692 | gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:3202185‑M2/49‑49 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:4900840‑M2/48‑50 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:3488266‑M2/48‑50 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:2458175‑M2/48‑50 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 1:5384251‑M2/46‑49 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 1:3743105‑M2/46‑49 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 1:7407183‑M2/46‑49 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAAc < 1:3679761‑M2/4‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAAc < 1:5087090‑M2/4‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAAc < 1:6347769‑M2/4‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa < 1:5265359‑M2/6‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:663750‑M2/5‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:2438658‑M2/5‑1 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt > 1:1138458‑M2/44‑50 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:3589099‑M2/7‑1 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:5258677‑M2/7‑1 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:5595252‑M2/7‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:6485832‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:2758703‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:2416223‑M2/43‑50 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:3953832‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:328661‑M2/43‑50 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:442307‑M2/43‑50 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc > 1:6055951‑M2/42‑50 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc < 1:6605324‑M2/9‑1 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc > 1:4698561‑M2/42‑50 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc < 1:1353792‑M2/9‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:2453866‑M2/41‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:1020829‑M2/41‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:3479623‑M2/11‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:501172‑M2/40‑50 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:6315797‑M2/12‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:4976415‑M2/39‑49 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:4570293‑M2/39‑49 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:4633840‑M2/38‑50 (MQ=255) tacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:6964052‑M2/37‑49 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGAc < 1:4616380‑M2/14‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg < 1:4987971‑M2/16‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:855170‑M2/35‑50 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg < 1:6449520‑M2/16‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg < 1:1643544‑M2/16‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:4400643‑M2/35‑50 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg < 1:703960‑M2/16‑1 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:2814446‑M2/34‑49 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg < 1:1749054‑M2/19‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:3933441‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:4276241‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa < 1:6192198‑M2/21‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:530994‑M2/29‑50 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:2308867‑M2/29‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCTGACAGGAGTACTAt > 1:7031918‑M2/26‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa < 1:2779494‑M2/24‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt < 1:7107943‑M2/25‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt < 1:3491143‑M2/25‑1 (MQ=255) tttataacaacatcaatgaatgcTAACAATGCCGGACAGGAGTACTATCa < 1:1642994‑M2/27‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:3754145‑M2/24‑48 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:783038‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCa < 1:1326270‑M2/27‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCa < 1:3251078‑M2/27‑1 (MQ=255) tataacaacatcaatgaattcTAACAATGCCGGACAGGAGTACTATCAg < 1:6458008‑M2/28‑1 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:5199195‑M2/22‑50 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:4821995‑M2/28‑1 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:3840877‑M2/28‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:6805094‑M2/21‑49 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa < 1:1505647‑M2/31‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa > 1:6866792‑M2/20‑50 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa < 1:5363156‑M2/31‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:6786226‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:4642894‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:5478527‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:3493082‑M2/18‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt < 1:4609072‑M2/32‑1 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:2002662‑M2/17‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:5203508‑M2/17‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:4769821‑M2/34‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt > 1:2055541‑M2/15‑50 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:5073285‑M2/36‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:4505485‑M2/37‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:4363798‑M2/37‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:6635840‑M2/37‑1 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtttt < 1:3379220‑M2/39‑1 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:3228125‑M2/12‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:55813‑M2/10‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:1464383‑M2/10‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:769237‑M2/10‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:3686375‑M2/10‑49 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata > 1:3598850‑M2/9‑50 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata < 1:7222421‑M2/42‑1 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata < 1:7453942‑M2/42‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:7089929‑M2/8‑50 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc < 1:527616‑M2/43‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:901750‑M2/8‑50 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa > 1:5619047‑M2/6‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 1:1251043‑M2/4‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 1:579441‑M2/2‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg < 1:766322‑M2/49‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:2775769‑M2/48‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:2291407‑M2/48‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:5135325‑M2/48‑1 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:3182284/1‑50 (MQ=255) | AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367595‑3367692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |