| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,593,299 | Δ10 bp | coding (130‑139/714 nt) | livF ← | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 16 (0.160) | 67 (0.690) | 49/98 | 0.1 | 81.2% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 15 (0.150) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593251‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGAT > NC_000913/3593309‑3593356 CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC < 1:67098/50‑1CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC > 1:5785065/1‑50CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC < 1:5344813/50‑1CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC < 1:3022137/50‑1 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCC > 1:6746435/1‑50 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCC < 1:4046050/50‑1 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC > 1:1691196/1‑50 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC < 1:2307580/50‑1 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:6884576/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC < 1:6707454/50‑1 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:6530053/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:4023022/1‑50 CCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCC > 1:670231/1‑50 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 1:7203825/1‑50 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 1:2905471/1‑50 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT > 1:279009/1‑50 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT < 1:6103492/50‑1 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT < 1:2039398/50‑1 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT > 1:4587866/1‑50 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC > 1:6442356/1‑50 TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG > 1:248675/1‑50 TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG > 1:5397220/1‑50 TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG > 1:4425206/1‑50 GTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCG < 1:7004567/50‑1 GTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCG < 1:2962934/50‑1 TGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGC > 1:652189/1‑50 GCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCC < 1:3421707/49‑1 CACGCGGATCGCCGCACAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAA > 1:3686728/1‑50 ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT < 1:7449503/50‑1 CGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 1:2405448/1‑49 GCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCA < 1:4455010/50‑1 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC < 1:7268549/50‑1 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC > 1:2592719/1‑50 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC > 1:7316313/1‑50 GATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCG > 1:1509598/1‑50 GATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCG < 1:3026583/50‑1 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT > 1:1756491/1‑50 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT < 1:7455264/50‑1 GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:2137238/1‑49 GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA < 1:1217537/49‑1 GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:3101398/1‑49 CCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACA < 1:7459166/50‑1 CCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGAC > 1:5660962/1‑49 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 1:3134498/1‑50 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT < 1:5156305/50‑1 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT > 1:4325401/1‑50 ATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCT < 1:2898247/50‑1 ATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCT < 1:5872971/50‑1 TAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTC > 1:4994560/1‑50 AACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCG > 1:6099692/1‑50 AACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCG > 1:558155/1‑50 AACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCG > 1:236712/1‑50 ACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGC < 1:2296754/50‑1 ACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGC > 1:3215356/1‑50 CGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC < 1:986730/50‑1 CGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC < 1:7120785/50‑1 GTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCC > 1:3021583/1‑50 TGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCT < 1:2027836/50‑1 CCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGA > 1:4511974/1‑50 CCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGA > 1:1397521/1‑50 CGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGAT > 1:5526902/1‑50 CGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGAT < 1:1646850/50‑1 CGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGAT < 1:963980/50‑1 GAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT < 1:5112841/50‑1 AGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTG < 1:6034681/50‑1 CACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGAT < 1:94528/50‑1 CACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGA > 1:3937692/1‑49 CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593251‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGAT > NC_000913/3593309‑3593356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |