| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,593,299 | Δ10 bp | coding (130‑139/714 nt) | livF ← | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 16 (0.160) | 67 (0.690) | 49/98 | 0.1 | 81.2% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 15 (0.150) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
CACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGC > NC_000913/3593249‑3593346 | cacaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCa < 1:4046149/50‑1 (MQ=255) acaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCaa < 1:4076686/50‑1 (MQ=255) caATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAcc < 1:3022137‑M1/50‑3 (MQ=255) caATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAcc < 1:5344813‑M1/50‑3 (MQ=255) caATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAcc > 1:5785065‑M1/1‑48 (MQ=255) caATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAcc < 1:67098‑M1/50‑3 (MQ=255) aaTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccc < 1:4046050‑M1/50‑4 (MQ=255) aaTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccc > 1:6746435‑M1/1‑47 (MQ=255) aTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAcccc > 1:1691196‑M1/1‑46 (MQ=255) aTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAcccc < 1:2307580‑M1/50‑5 (MQ=255) ttCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtg > 1:4174716/1‑50 (MQ=255) tCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtgg > 1:1912529/1‑50 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc < 1:6707454‑M1/50‑9 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc > 1:4023022‑M1/1‑42 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc > 1:6530053‑M1/1‑42 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc > 1:6884576‑M1/1‑42 (MQ=255) cccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgcccc > 1:670231‑M1/1‑41 (MQ=255) cccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGttt < 1:1870321/50‑1 (MQ=255) ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccg > 1:7203825‑M1/1‑40 (MQ=255) ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccg > 1:2905471‑M1/1‑40 (MQ=255) ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtttt < 1:4219592/50‑1 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 1:7458015/1‑50 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgtt > 1:279009‑M1/1‑38 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgtt > 1:4587866‑M1/1‑38 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgtt < 1:6103492‑M1/50‑13 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgtt < 1:2039398‑M1/50‑13 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc > 1:5960536/1‑50 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGCGGTTTTcc > 1:1396021/1‑50 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttc > 1:6442356‑M1/1‑37 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccc < 1:212083/50‑1 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcg > 1:5397220‑M1/1‑36 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcg > 1:4425206‑M1/1‑36 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcg > 1:248675‑M1/1‑36 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcg < 1:7004567‑M1/50‑17 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcg < 1:2962934‑M1/50‑17 (MQ=255) tggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgc > 1:652189‑M1/1‑33 (MQ=255) gCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgcc < 1:3421707‑M1/49‑19 (MQ=255) cACGCGGATCGCCGCACAACGTGCCGAGCAccccgccccgttcgcgccaa > 1:3686728‑M1/1‑30 (MQ=255) aCGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaat < 1:7449503‑M1/50‑22 (MQ=255) cgcgGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaat > 1:2405448‑M1/1‑28 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatca < 1:4455010‑M1/50‑24 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAGGGTGGTTTTCCCCGCCCCGTTc < 1:2944095/50‑1 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc > 1:2592719‑M1/1‑25 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc < 1:7268549‑M1/50‑26 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc > 1:7316313‑M1/1‑25 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc > 1:4985680/1‑50 (MQ=255) gATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcg > 1:1509598‑M1/1‑24 (MQ=255) gATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcg < 1:3026583‑M1/50‑27 (MQ=255) gATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgcg > 1:337738/1‑50 (MQ=255) aTCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgt > 1:1756491‑M1/1‑23 (MQ=255) aTCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgt < 1:7455264‑M1/50‑28 (MQ=255) gccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtga < 1:1217537‑M1/49‑30 (MQ=255) gccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtga > 1:3101398‑M1/1‑20 (MQ=255) gccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtga > 1:2137238‑M1/1‑20 (MQ=255) ccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgaca < 1:7459166‑M1/50‑32 (MQ=255) ccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgac > 1:5660962‑M1/1‑19 (MQ=255) cgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaa > 1:3134498‑M1/1‑18 (MQ=255) gcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaat < 1:5156305‑M1/50‑34 (MQ=255) gcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaat > 1:4325401‑M1/1‑17 (MQ=255) gcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:3089598/1‑48 (MQ=255) gcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:4342062/1‑48 (MQ=255) aTAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatct < 1:5872971‑M1/50‑36 (MQ=255) aTAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatct < 1:2898247‑M1/50‑36 (MQ=255) tAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctc > 1:4994560‑M1/1‑14 (MQ=255) aaCGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcg > 1:558155‑M1/1‑13 (MQ=255) aaCGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcg > 1:236712‑M1/1‑13 (MQ=255) aaCGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcg > 1:6099692‑M1/1‑13 (MQ=255) aCGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgc > 1:3215356‑M1/1‑12 (MQ=255) aCGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgc < 1:2296754‑M1/50‑39 (MQ=255) cGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgcc < 1:986730‑M1/50‑40 (MQ=255) cGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgcc < 1:7120785‑M1/50‑40 (MQ=255) gTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccc > 1:3021583‑M1/1‑10 (MQ=255) tGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccct < 1:2027836‑M1/50‑42 (MQ=255) ccGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctga > 1:1397521‑M1/1‑7 (MQ=255) ccGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctga > 1:4511974‑M1/1‑7 (MQ=255) ccGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa < 1:2412867/49‑1 (MQ=255) cGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgat > 1:5526902‑M1/1‑6 (MQ=255) cGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgat < 1:1646850‑M1/50‑45 (MQ=255) cGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgat < 1:963980‑M1/50‑45 (MQ=255) gAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgatt < 1:5112841‑M1/50‑46 (MQ=255) aGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgattg < 1:6034681‑M1/50‑47 (MQ=255) aGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc > 1:2117810/1‑50 (MQ=255) cAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgattgat < 1:94528‑M1/50‑49 (MQ=255) cAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgattga > 1:3937692‑M1/1‑2 (MQ=255) | CACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGC > NC_000913/3593249‑3593346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |