| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 78 [0] | [0] 76 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 75 (0.770) | 46/98 | 0.2 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA > 1:6602751/1‑50 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:3391818/1‑50 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 1:3607629/50‑1 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:3713710/1‑50 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 1:5610075/50‑1 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:7422021/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:5654435/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:6568459/1‑50 GGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:6086435/1‑49 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 1:856782/50‑1 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:4921927/50‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC > 1:4962155/1‑50 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:4786786/1‑50 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:2810042/1‑50 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 1:6146033/1‑50 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 1:5114919/1‑50 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTC < 1:127488/49‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:4668059/48‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:584163/48‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 1:5609306/1‑50 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 1:1472394/1‑50 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:3531869/48‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAA < 1:3043985/50‑1 CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAA < 1:1960541/50‑1 CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAA < 1:572488/50‑1 CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:1566289/1‑48 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG < 1:1649742/50‑1 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG < 1:6600455/50‑1 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG > 1:6143531/1‑50 CGCCGCCCAGCGAGTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG < 1:4092325/50‑1 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG > 1:672100/1‑50 GCCCAGCGATTTCATCAACTGAATGGGTGCAGCCTCCCTAAAAAAGTGGC < 1:3580424/50‑1 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:6363270/1‑50 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT > 1:5237917/1‑50 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT < 1:420261/50‑1 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC < 1:6161462/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA > 1:2358992/1‑50 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:7195666/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA > 1:4536094/1‑50 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:5542358/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:1594026/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA > 1:6230920/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:1021646/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:5889273/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:7094953/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:3131146/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:255858/50‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:982264/1‑50 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:3344147/1‑50 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG < 1:3521156/50‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:4224135/1‑50 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:3788233/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:4241119/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:1485664/1‑50 TTTCATCAACTGAGTGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:6617772/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:6818092/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:3946682/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:4411869/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:4591034/1‑50 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC > 1:4234601/1‑50 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:4493053/49‑1 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC < 1:24297/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGG < 1:1990070/50‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG < 1:6539733/49‑1 CAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT > 1:2773957/1‑50 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATT < 1:6135947/50‑1 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT < 1:6940554/49‑1 ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA < 1:5632890/50‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT > 1:3173147/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > 1:6938469/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > 1:188420/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > 1:1398665/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:2292271/49‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:3598783/49‑1 GGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > 1:2770511/1‑50 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |