| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 78 [0] | [0] 76 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 75 (0.770) | 46/98 | 0.2 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
GACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGG > NC_000913/4299579‑4299676 | gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:6084757/1‑49 (MQ=255)gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:3866613/1‑49 (MQ=255)gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:566954/1‑49 (MQ=255) aCGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGga > 1:6602751‑M1/1‑48 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:7422021‑M1/1‑47 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:5610075‑M1/50‑4 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:3713710‑M1/1‑47 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:3607629‑M1/50‑4 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:3391818‑M1/1‑47 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:5654435‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:6568459‑M1/1‑46 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:6086435‑M1/1‑45 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:856782‑M1/50‑7 (MQ=255) aCCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcag < 1:4921927‑M1/50‑8 (MQ=255) cctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagc > 1:4962155‑M1/1‑42 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc > 1:4786786‑M1/1‑41 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc > 1:2810042‑M1/1‑41 (MQ=255) tgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct > 1:5114919‑M1/1‑40 (MQ=255) tgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct > 1:6146033‑M1/1‑40 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctc < 1:127488‑M1/49‑12 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct < 1:4668059‑M1/48‑11 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct < 1:584163‑M1/48‑11 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 1:1472394‑M1/1‑37 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 1:5609306‑M1/1‑37 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct < 1:3531869‑M1/48‑15 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaa < 1:3043985‑M1/50‑20 (MQ=255) ccgccgCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaa < 1:572488‑M1/50‑21 (MQ=255) ccgccgCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaa < 1:1960541‑M1/50‑21 (MQ=255) ccgccgCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa > 1:1566289‑M1/1‑30 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag < 1:1649742‑M1/50‑22 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag < 1:6600455‑M1/50‑22 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag > 1:6143531‑M1/1‑29 (MQ=255) cgccgcCCAGCGAGTTCATCAACTGAATGgatgcagcctccctaaaaaag < 1:4092325‑M1/50‑22 (MQ=255) cgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtgg > 1:672100‑M1/1‑26 (MQ=255) gccCAGCGATTTCATCAACTGAATGggtgcagcctccctaaaaaagtggc < 1:3580424‑M1/50‑26 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc > 1:6363270‑M1/1‑25 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct < 1:420261‑M1/50‑27 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct > 1:5237917‑M1/1‑24 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc < 1:6161462‑M1/50‑28 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 1:7195666‑M1/50‑30 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 1:5542358‑M1/50‑30 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca > 1:6230920‑M1/1‑21 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca > 1:4536094‑M1/1‑21 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 1:1594026‑M1/50‑30 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca > 1:2358992‑M1/1‑21 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc > 1:1021646‑M1/1‑19 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:7094953‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:255858‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:3131146‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc > 1:5889273‑M1/1‑19 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:982264‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:3344147‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg < 1:3521156‑M1/50‑33 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:3788233‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:4224135‑M1/1‑18 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 1:4241119‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 1:1485664‑M1/1‑17 (MQ=255) tttCATCAACTGAGTGgatgcagcctccctaaaaaagtggctccatcgtg > 1:6617772‑M1/1‑16 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:4591034‑M1/1‑16 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:3946682‑M1/1‑16 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:4411869‑M1/1‑16 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:6818092‑M1/1‑16 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc > 1:4234601‑M1/1‑14 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtgg < 1:4493053‑M1/49‑36 (MQ=255) catcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc < 1:24297‑M1/49‑37 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcgg < 1:1990070‑M1/50‑39 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg < 1:6539733‑M1/49‑38 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 1:2773957‑M1/1‑10 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatt < 1:6135947‑M1/50‑42 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat < 1:6940554‑M1/49‑41 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta < 1:5632890‑M1/50‑43 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat > 1:3173147‑M1/1‑7 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt > 1:188420‑M1/1‑4 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt > 1:6938469‑M1/1‑4 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt > 1:1398665‑M1/1‑4 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg < 1:2292271‑M1/49‑46 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg < 1:3598783‑M1/49‑46 (MQ=255) ggatgcagcctccctaaaaaagtggctccatcgtggcggattattgtgac > 1:2770511‑M1/1‑1 (MQ=255) | GACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGG > NC_000913/4299579‑4299676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |