| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 4,400,289 | Δ7 bp | coding (2‑8/309 nt) | hfq → | RNA‑binding protein Hfq |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 11 (0.110) | 80 (0.850) | 54/94 | 0.0 | 87.2% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 13 (0.140) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:5071498/49‑1CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGA < 1:6387460/49‑1 AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA < 1:5271894/49‑1 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:6065855/1‑50 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:5485348/1‑50 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG < 1:4106433/50‑1 GAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:3894082/1‑50 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:647419/1‑50 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:5596918/1‑50 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG < 1:3178100/50‑1 AATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG < 1:3133370/50‑1 TCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:2539659/1‑49 CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:1661197/1‑49 CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:5044110/1‑49 CGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:693520/1‑49 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4151747/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:5163679/1‑50 GAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCA < 1:1582294/49‑1 AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:6219049/50‑1 AAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC > 1:5655684/1‑50 AGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:3509135/1‑50 GGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:2461934/1‑50 GGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT < 1:1234539/50‑1 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:1418457/1‑50 TTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:6156782/1‑50 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:1459620/49‑1 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:1496438/49‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:4440795/50‑1 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:283464/1‑48 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG < 1:4030400/50‑1 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:5360799/50‑1 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:2630653/1‑50 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:3831483/50‑1 ACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:7184975/1‑50 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:523427/1‑50 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:3661307/50‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:1678466/1‑50 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:1425963/1‑50 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:203537/50‑1 AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGT > 1:6844184/1‑50 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:2969569/1‑50 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:4383328/1‑50 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC > 1:17998/1‑50 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC < 1:5372116/50‑1 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA < 1:2154077/50‑1 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:59426/1‑50 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:1592919/1‑50 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 1:3240952/50‑1 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 1:7151049/50‑1 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC > 1:1082019/1‑50 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAAC < 1:2842213/50‑1 ATATAAGGAAAAGAGAGAAGGGGCAATCTATACAAGATCCGTTCCTGAAC > 1:664954/1‑50 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:5775466/1‑50 ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:2117345/1‑49 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA < 1:1844039/50‑1 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCA > 1:1714025/1‑50 AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAC > 1:2132258/1‑50 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACT > 1:6056416/1‑50 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG < 1:5511484/50‑1 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTG > 1:2947087/1‑50 GAAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGC > 1:1132163/1‑50 AAAAGAGAGAAGGTGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCG > 1:5408293/1‑50 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGT < 1:382168/50‑1 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC > 1:1403914/1‑50 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:3828140/50‑1 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTC < 1:3345661/50‑1 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:6320311/1‑50 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > 1:218814/1‑50 AGAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG < 1:276465/50‑1 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG < 1:6925011/50‑1 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG < 1:2102677/50‑1 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:2084858/1‑49 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGG > 1:7046952/1‑49 GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGG > 1:3818340/1‑49 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:5401732/1‑50 AGAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAA > 1:1454414/1‑50 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:5663417/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:2198268/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:5491173/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:6364990/1‑50 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC < 1:3679519/50‑1 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:2026681/1‑50 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAC > 1:1824892/1‑50 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACG > 1:6863702/1‑50 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > 1:2046612/1‑50 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:6799628/50‑1 AGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT < 1:2813739/50‑1 CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400239‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGT > NC_000913/4400296‑4400344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |