| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 4,400,289 | Δ7 bp | coding (2‑8/309 nt) | hfq → | RNA‑binding protein Hfq |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 11 (0.110) | 80 (0.850) | 54/94 | 0.0 | 87.2% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 13 (0.140) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400240‑4400337 | aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA < 1:5271894‑M1/49‑1 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg > 1:6065855‑M1/1‑48 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg > 1:3894082‑M1/1‑48 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg < 1:4106433‑M1/50‑3 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg > 1:5485348‑M1/1‑48 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg > 1:5596918‑M1/1‑47 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg > 1:647419‑M1/1‑47 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg < 1:3178100‑M1/50‑4 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg < 1:3133370‑M1/50‑4 (MQ=255) tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg > 1:2539659‑M1/1‑45 (MQ=255) cGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggc > 1:1661197‑M1/1‑44 (MQ=255) cGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggc > 1:693520‑M1/1‑44 (MQ=255) cGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggc > 1:5044110‑M1/1‑44 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa > 1:5163679‑M1/1‑43 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa > 1:4151747‑M1/1‑43 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggca < 1:1582294‑M1/49‑7 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTa < 1:5950276/49‑1 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaat < 1:6219049‑M1/50‑9 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc > 1:5655684‑M1/1‑41 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct > 1:3509135‑M1/1‑40 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAggg < 1:6457933/50‑1 (MQ=255) ggTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt < 1:1234539‑M1/50‑12 (MQ=255) ggTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt > 1:2461934‑M1/1‑39 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttta > 1:6156782‑M1/1‑37 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttta > 1:1418457‑M1/1‑37 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac < 1:1496438‑M1/49‑15 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac < 1:1459620‑M1/49‑15 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaa < 1:4440795‑M1/50‑17 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac > 1:283464‑M1/1‑34 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt < 1:7445646/49‑1 (MQ=255) aaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaag < 1:4030400‑M1/50‑18 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc > 1:2630653‑M1/1‑30 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc < 1:5360799‑M1/50‑21 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc < 1:3831483‑M1/50‑21 (MQ=255) aCAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatcc > 1:7184975‑M1/1‑29 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg > 1:523427‑M1/1‑28 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg < 1:203537‑M1/50‑23 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg > 1:1678466‑M1/1‑28 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg > 1:1425963‑M1/1‑28 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg < 1:3661307‑M1/50‑23 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgt > 1:6844184‑M1/1‑27 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt > 1:4383328‑M1/1‑26 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt > 1:2969569‑M1/1‑26 (MQ=255) aTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGa < 1:889120/50‑1 (MQ=255) tAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcc < 1:5372116‑M1/50‑27 (MQ=255) tAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcc > 1:17998‑M1/1‑24 (MQ=255) gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga < 1:2154077‑M1/50‑30 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa < 1:7151049‑M1/50‑31 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa > 1:1592919‑M1/1‑20 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa < 1:3240952‑M1/50‑31 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa > 1:59426‑M1/1‑20 (MQ=255) atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac > 1:1082019‑M1/1‑19 (MQ=255) atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac < 1:2842213‑M1/50‑32 (MQ=255) atatAAGGAAAAGAGAGAAggggcaatctatacaagatccgttcctgaac > 1:664954‑M1/1‑19 (MQ=255) tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg > 1:5775466‑M1/1‑18 (MQ=255) ataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg > 1:2117345‑M1/1‑17 (MQ=255) taAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgca < 1:1844039‑M1/50‑35 (MQ=255) taAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgca > 1:1714025‑M1/1‑16 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTcc < 1:5630030/49‑1 (MQ=255) aaGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcac > 1:2132258‑M1/1‑15 (MQ=255) aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcact > 1:6056416‑M1/1‑14 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTg > 1:187013/1‑49 (MQ=255) ggAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactg > 1:2947087‑M1/1‑13 (MQ=255) ggAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactg < 1:5511484‑M1/50‑38 (MQ=255) gAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgc > 1:1132163‑M1/1‑12 (MQ=255) aaaaGAGAGAAggtgcaatctttacaagatccgttcctgaacgcactgcg > 1:5408293‑M1/1‑11 (MQ=255) aaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgt < 1:382168‑M1/50‑41 (MQ=255) aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc < 1:3828140‑M1/50‑42 (MQ=255) aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc > 1:1403914‑M1/1‑9 (MQ=255) aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc < 1:3345661‑M1/50‑42 (MQ=255) agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg > 1:218814‑M1/1‑8 (MQ=255) agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg < 1:276465‑M1/50‑43 (MQ=255) agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg > 1:6320311‑M1/1‑8 (MQ=255) gagagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg < 1:6925011‑M1/50‑44 (MQ=255) gagagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 1:4189464/50‑1 (MQ=255) agagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcggg < 1:2102677‑M1/50‑45 (MQ=255) agagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg > 1:2084858‑M1/1‑6 (MQ=255) agagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg > 1:7046952‑M1/1‑6 (MQ=255) agagaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg > 1:4211016/1‑50 (MQ=255) gagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcggg > 1:3818340‑M1/1‑5 (MQ=255) agaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaa > 1:1454414‑M1/1‑4 (MQ=255) agaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaa > 1:5401732‑M1/1‑4 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac > 1:6364990‑M1/1‑3 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac > 1:1824892‑M1/1‑3 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 1:2198268‑M1/50‑48 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac > 1:2026681‑M1/1‑3 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 1:3679519‑M1/50‑48 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 1:5663417‑M1/50‑48 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 1:5491173‑M1/50‑48 (MQ=255) aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg > 1:6863702‑M1/1‑2 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:6617365/50‑1 (MQ=255) aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt < 1:2813739‑M1/50‑50 (MQ=255) aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt < 1:6799628‑M1/50‑50 (MQ=255) aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt > 1:2046612‑M1/1‑1 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg < 1:7138191/50‑1 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:7253070/1‑50 (MQ=255) | AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400240‑4400337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |