| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 97 [0] | [0] 102 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 85 (1.040) | 57/82 | 0.0 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
AGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCG > NC_000913/257859‑257956 | aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa < 1:1355371‑M1/50‑2 (MQ=255)aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa < 1:1361689‑M1/50‑2 (MQ=255) gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAag > 1:7029200‑M1/1‑48 (MQ=255) gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAag < 1:927559‑M1/50‑3 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:626430‑M1/50‑4 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:3113296‑M1/50‑4 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt > 1:4513845‑M1/1‑47 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt > 1:5429010‑M1/1‑47 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:3576428‑M1/1‑46 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg < 1:4076085‑M1/50‑5 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:4638855‑M1/1‑46 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg < 1:2119341‑M1/50‑5 (MQ=255) tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:3846791‑M1/1‑45 (MQ=255) gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc > 1:5350082‑M1/1‑44 (MQ=255) gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc > 1:413388‑M1/1‑44 (MQ=255) gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc < 1:1549459‑M1/49‑6 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca > 1:1407540‑M1/1‑43 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca < 1:4455520‑M1/49‑7 (MQ=255) tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca > 1:2716598‑M1/1‑42 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 1:2467179‑M1/50‑11 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag < 1:3658858‑M1/49‑10 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag < 1:1482458‑M1/49‑10 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat < 1:7067473‑M1/50‑12 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat < 1:3950358‑M1/50‑12 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat < 1:2682386‑M1/50‑12 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat < 1:4359351‑M1/50‑12 (MQ=255) aaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagata < 1:7341429‑M1/50‑13 (MQ=255) aaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagata < 1:3275414‑M1/50‑13 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa < 1:4682592‑M1/50‑14 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:7439783‑M1/50‑15 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:6650380‑M1/50‑15 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat > 1:2097803‑M1/1‑36 (MQ=255) aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc > 1:3452219‑M1/1‑35 (MQ=255) tACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat > 1:267485‑M1/1‑32 (MQ=255) aCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt > 1:4189876‑M1/1‑31 (MQ=255) aCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat < 1:3097824‑M1/49‑19 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc < 1:6504063‑M1/50‑21 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc < 1:165777‑M1/50‑21 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc > 1:1714239‑M1/1‑30 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt < 1:4623414‑M1/49‑20 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt < 1:5217886‑M1/49‑20 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct < 1:3041942‑M1/50‑22 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct > 1:3562901‑M1/1‑29 (MQ=255) gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctt < 1:1332256‑M1/50‑23 (MQ=255) cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttt < 1:944297‑M1/50‑24 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 1:3249218‑M1/50‑25 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt > 1:7411575‑M1/1‑26 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt > 1:1804940‑M1/1‑26 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 1:1585482‑M1/50‑25 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt > 1:1344188‑M1/1‑25 (MQ=255) aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc > 1:7472254‑M1/1‑23 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga < 1:4340411‑M1/50‑29 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga > 1:1398419‑M1/1‑22 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga < 1:4474536‑M1/50‑29 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga < 1:7412703‑M1/50‑29 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg < 1:5707105‑M1/49‑28 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc < 1:4633312‑M1/48‑27 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat > 1:4392218‑M1/1‑21 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat < 1:3316230‑M1/50‑30 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat > 1:4876902‑M1/1‑21 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt > 1:4260302‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt < 1:317481‑M1/50‑31 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt < 1:4022007‑M1/50‑31 (MQ=255) ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattg > 1:5934362‑M1/1‑19 (MQ=255) cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt > 1:637562‑M1/1‑18 (MQ=255) cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:6191657‑M1/50‑33 (MQ=255) cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt > 1:873019‑M1/1‑18 (MQ=255) cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:819934‑M1/50‑33 (MQ=255) cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt < 1:6844710‑M1/50‑33 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc < 1:4563173‑M1/50‑34 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc > 1:6174696‑M1/1‑17 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct > 1:1931152‑M1/1‑16 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct < 1:2907814‑M1/50‑35 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct > 1:3040447‑M1/1‑16 (MQ=255) atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctg > 1:5183808‑M1/1‑15 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctg < 1:5646412‑M1/49‑36 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctg < 1:2678443‑M1/49‑36 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc > 1:1451709‑M1/1‑13 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc > 1:6960270‑M1/1‑13 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 1:1295417‑M1/50‑39 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc < 1:3557818‑M1/49‑38 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc < 1:2170496‑M1/49‑38 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc < 1:774992‑M1/49‑38 (MQ=255) cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg < 1:4308977‑M1/49‑40 (MQ=255) gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta > 1:3097278‑M1/1‑9 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat > 1:1805192‑M1/1‑8 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat < 1:2609180‑M1/50‑43 (MQ=255) gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg > 1:3965354‑M1/1‑7 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc > 1:5823575‑M1/1‑6 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg < 1:3529221‑M1/49‑44 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt < 1:2384541‑M1/50‑47 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc < 1:12716‑M1/50‑48 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt > 1:3214294‑M1/1‑3 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt > 1:5342787‑M1/1‑3 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggccgtatgcgt > 1:6483730‑M1/1‑3 (MQ=255) tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc > 1:3442656‑M1/1‑2 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa > 1:3088602‑M1/1‑1 (MQ=255) | AGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCG > NC_000913/257859‑257956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |