BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	257908	258683	776	97 [0]	[0] 102	insB9–[crl]	insB9,insA9,[crl]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 257907	0 (0.000)	85 (1.040)	57/82	0.0	100%	intergenic (+8/+16)	crl/insB9	RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B
*	?	NC_000913	258684 =	0 (0.000)	85 (1.040)	57/82	0.0	100%	pseudogene (9/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl

Only 100 of 102 total aligned reads displayed.

AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAC  >  NC_000913/258635‑258733

agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                   <  1:1355371‑M2/1‑1 (MQ=255)

agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                   <  1:1361689‑M2/1‑1 (MQ=255)

 gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg                                                  <  1:927559‑M2/2‑1 (MQ=255)

 gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg                                                  >  1:7029200‑M2/49‑50 (MQ=255)

  attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                 <  1:626430‑M2/3‑1 (MQ=255)

  attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                 >  1:5429010‑M2/48‑50 (MQ=255)

  attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                 >  1:4513845‑M2/48‑50 (MQ=255)

  attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                 <  1:3113296‑M2/3‑1 (MQ=255)

   ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                <  1:4076085‑M2/4‑1 (MQ=255)

   ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                >  1:4638855‑M2/47‑50 (MQ=255)

   ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                >  1:3576428‑M2/47‑50 (MQ=255)

   ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                <  1:2119341‑M2/4‑1 (MQ=255)

    tgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                >  1:3846791‑M2/46‑49 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               >  1:5350082‑M2/45‑49 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               <  1:1549459‑M2/5‑1 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               >  1:413388‑M2/45‑49 (MQ=255)

      atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa                                              <  1:4455520‑M2/6‑1 (MQ=255)

      atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa                                              >  1:1407540‑M2/44‑49 (MQ=255)

       tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa                                              >  1:2716598‑M2/43‑48 (MQ=255)

         aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg                                           <  1:1482458‑M2/9‑1 (MQ=255)

         aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg                                           <  1:3658858‑M2/9‑1 (MQ=255)

         aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa                                          <  1:2467179‑M2/10‑1 (MQ=255)

          aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt                                         <  1:4359351‑M2/11‑1 (MQ=255)

          aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt                                         <  1:7067473‑M2/11‑1 (MQ=255)

          aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt                                         <  1:3950358‑M2/11‑1 (MQ=255)

          aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt                                         <  1:2682386‑M2/11‑1 (MQ=255)

           aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa                                        <  1:3275414‑M2/12‑1 (MQ=255)

           aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa                                        <  1:7341429‑M2/12‑1 (MQ=255)

            aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa                                       <  1:4682592‑M2/13‑1 (MQ=255)

             aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                      <  1:7439783‑M2/14‑1 (MQ=255)

             aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                      >  1:2097803‑M2/37‑50 (MQ=255)

             aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                      <  1:6650380‑M2/14‑1 (MQ=255)

              atttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                     >  1:3452219‑M2/36‑50 (MQ=255)

                 taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt                                  >  1:267485‑M2/33‑50 (MQ=255)

                  accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt                                 >  1:4189876‑M2/32‑50 (MQ=255)

                  accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt                                  <  1:3097824‑M2/18‑1 (MQ=255)

                   ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt                                 <  1:4623414‑M2/19‑1 (MQ=255)

                   ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt                                 <  1:5217886‑M2/19‑1 (MQ=255)

                   ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc                                <  1:6504063‑M2/20‑1 (MQ=255)

                   ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc                                >  1:1714239‑M2/31‑50 (MQ=255)

                   ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc                                <  1:165777‑M2/20‑1 (MQ=255)

                    cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt                               >  1:3562901‑M2/30‑50 (MQ=255)

                    cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt                               <  1:3041942‑M2/21‑1 (MQ=255)

                     gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt                              <  1:1332256‑M2/22‑1 (MQ=255)

                       actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            <  1:1585482‑M2/24‑1 (MQ=255)

                       actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            <  1:3249218‑M2/24‑1 (MQ=255)

                       actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            >  1:1804940‑M2/27‑50 (MQ=255)

                       actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            >  1:7411575‑M2/27‑50 (MQ=255)

                        ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                           >  1:1344188‑M2/26‑50 (MQ=255)

                          aggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  1:7472254‑M2/24‑49 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          <  1:4633312‑M2/26‑1 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg                         <  1:5707105‑M2/27‑1 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                        <  1:7412703‑M2/28‑1 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                        <  1:4474536‑M2/28‑1 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                        >  1:1398419‑M2/23‑50 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                        <  1:4340411‑M2/28‑1 (MQ=255)

                            gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                       >  1:4876902‑M2/22‑50 (MQ=255)

                            gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                       >  1:4392218‑M2/22‑50 (MQ=255)

                            gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                       <  1:3316230‑M2/29‑1 (MQ=255)

                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      >  1:4260302‑M2/21‑50 (MQ=255)

                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      <  1:317481‑M2/30‑1 (MQ=255)

                              ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     >  1:5934362‑M2/20‑50 (MQ=255)

                               cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                    <  1:6191657‑M2/32‑1 (MQ=255)

                               cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                    <  1:819934‑M2/32‑1 (MQ=255)

                               cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                    >  1:873019‑M2/19‑50 (MQ=255)

                               cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                    >  1:637562‑M2/19‑50 (MQ=255)

                               cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                    <  1:6844710‑M2/32‑1 (MQ=255)

                                gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                   >  1:6174696‑M2/18‑50 (MQ=255)

                                gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                   <  1:4563173‑M2/33‑1 (MQ=255)

                                 tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                  >  1:1931152‑M2/17‑50 (MQ=255)

                                 tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                  <  1:2907814‑M2/34‑1 (MQ=255)

                                 tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                  >  1:3040447‑M2/17‑50 (MQ=255)

                                  atattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 >  1:5183808‑M2/16‑50 (MQ=255)

                                   tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 <  1:2678443‑M2/35‑1 (MQ=255)

                                   tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 <  1:5646412‑M2/35‑1 (MQ=255)

                                    attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc               >  1:6960270‑M2/14‑50 (MQ=255)

                                    attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc               >  1:1451709‑M2/14‑50 (MQ=255)

                                     ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc               <  1:774992‑M2/37‑1 (MQ=255)

                                     ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc               <  1:2170496‑M2/37‑1 (MQ=255)

                                     ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc               <  1:3557818‑M2/37‑1 (MQ=255)

                                     ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt              <  1:1295417‑M2/38‑1 (MQ=255)

                                       cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg             <  1:4308977‑M2/39‑1 (MQ=255)

                                        gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa           >  1:3097278‑M2/10‑50 (MQ=255)

                                         tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt          >  1:1805192‑M2/9‑50 (MQ=255)

                                         tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt          <  1:2609180‑M2/42‑1 (MQ=255)

                                          gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         >  1:3965354‑M2/8‑50 (MQ=255)

                                           aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         <  1:3529221‑M2/43‑1 (MQ=255)

                                           aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc        >  1:5823575‑M2/7‑50 (MQ=255)

                                             ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt      <  1:2384541‑M2/46‑1 (MQ=255)

                                              gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt      >  1:5342787‑M2/4‑49 (MQ=255)

                                              gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt      >  1:3214294‑M2/4‑49 (MQ=255)

                                              gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc     <  1:12716‑M2/47‑1 (MQ=255)

                                              gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCCGTATGCGt      >  1:6483730‑M2/4‑49 (MQ=255)

                                               taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc     >  1:3442656‑M2/3‑49 (MQ=255)

                                                aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa   >  1:3088602‑M2/2‑50 (MQ=255)

                                                 aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa   <  1:6359200/49‑1 (MQ=255)

                                                 aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc  >  1:1722013/1‑50 (MQ=255)

                                                 aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc  <  1:4403513/50‑1 (MQ=255)

                                                 aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc  <  1:6635955/50‑1 (MQ=255)

                                                 aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc  <  1:5078701/50‑1 (MQ=255)

AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAC  >  NC_000913/258635‑258733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`