Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 92 [0] | [0] 89 | [mngR]–mngB | [mngR],mngA,mngB |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 765207 | 0 (0.000) | 88 (0.920) | 57/96 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA > NC_000913/765157‑765255 | cgctATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:6319413‑M1/1‑50 (MQ=255) cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2395344‑M1/1‑50 (MQ=255) cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1693971‑M1/1‑50 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 1:6460095‑M1/50‑2 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 1:4897977‑M1/50‑2 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2912495‑M1/1‑49 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta < 1:608153‑M1/50‑3 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag < 1:7167853‑M1/50‑4 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:1848702‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag < 1:5672158‑M1/50‑4 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 1:1475283‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 1:5292085‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:3538386‑M1/1‑46 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:6708629‑M1/50‑6 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:206159‑M1/1‑44 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:1111997‑M1/50‑8 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa < 1:5423812‑M1/49‑7 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa < 1:2323521‑M1/49‑7 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:6512050‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:3879984‑M1/1‑42 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:4293043‑M1/1‑42 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa > 1:6649404‑M1/1‑39 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa > 1:5566309‑M1/1‑39 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa < 1:4325877‑M1/49‑11 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa < 1:1836259‑M1/49‑11 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:2374427‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:3429260‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:5251502‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 1:4947121‑M1/49‑12 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 1:1943802‑M1/49‑12 (MQ=255) gCTGCGCTATCGGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:1740881‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:6669050‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:3730432‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac < 1:6131245‑M1/49‑13 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg < 1:4503740‑M1/50‑15 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:4189254‑M1/1‑33 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:2263491‑M1/1‑33 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa < 1:7125176‑M1/49‑17 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa < 1:413152‑M1/49‑17 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccga < 1:7151071‑M1/48‑16 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:835350‑M1/1‑32 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:3852312‑M1/1‑32 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:1319417‑M1/1‑32 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:311373‑M1/1‑32 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc < 1:1823971‑M1/50‑19 (MQ=255) cTATCAGGTTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:6853198‑M1/1‑31 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:4804130‑M1/1‑31 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:5139452‑M1/1‑30 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:5344346‑M1/1‑30 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:3415629‑M1/1‑30 (MQ=255) aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:4894629‑M1/1‑29 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:2961820‑M1/1‑28 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccac < 1:2329108‑M1/49‑22 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccac < 1:3690382‑M1/49‑22 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca < 1:109874‑M1/48‑21 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:5349718‑M1/1‑27 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata < 1:3556265‑M1/50‑25 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata > 1:4038171‑M1/1‑26 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat < 1:5231713‑M1/49‑24 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 1:4067467‑M1/50‑26 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat > 1:323234‑M1/1‑25 (MQ=255) ggTAAA‑TTATAGTCATCGTTATTAtagcaatcaaaccgaagccacatatg > 1:4173850‑M1/1‑24 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:6147832‑M1/50‑28 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgc < 1:628058‑M1/47‑30 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg > 1:6373868‑M1/2‑19 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg > 1:3674157‑M1/2‑19 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc < 1:4712772‑M1/50‑33 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:2381531‑M1/1‑18 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcc < 1:5019037‑M1/49‑34 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccag < 1:3535524‑M1/50‑36 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccag < 1:6588837‑M1/50‑36 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:2906715‑M1/1‑14 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat < 1:1874627‑M1/50‑38 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt < 1:7317572‑M1/50‑39 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt < 1:1498116‑M1/50‑39 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt > 1:675579‑M1/1‑12 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt < 1:331483‑M1/50‑39 (MQ=255) aTCGGTATTAtagcaatcaaaccgaatccacatatgcgcggccagattgt > 1:1159776‑M1/1‑10 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt < 1:750111‑M1/50‑41 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt > 1:683867‑M1/1‑10 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg < 1:3786714‑M1/49‑40 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt < 1:2412675‑M1/50‑42 (MQ=255) cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt > 1:4039954‑M1/1‑8 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga < 1:6620878‑M1/50‑44 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 1:1107546‑M1/49‑43 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 1:4137618‑M1/49‑43 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttgac < 1:1906428‑M1/50‑45 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttgac < 1:2944056‑M1/50‑45 (MQ=255) tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca < 1:287460‑M1/50‑46 (MQ=255) tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca < 1:3170849‑M1/50‑46 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaa < 1:7008669‑M1/50‑48 (MQ=255) tatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag > 1:2857856‑M1/1‑2 (MQ=255) | CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA > NC_000913/765157‑765255 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |