BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	765,208	Δ5,405 bp		[mngR]–mngB	[mngR], mngA, mngB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	765208	770612	5405	92 [0]	[0] 89	[mngR]–mngB	[mngR],mngA,mngB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 765207	0 (0.000)	88 (0.920)	57/96	0.0	100%	coding (669/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
*	?	NC_000913	770613 =	0 (0.000)	88 (0.920)	57/96	0.0	100%	intergenic (+2/‑845)	mngB/cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I

CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA  >  NC_000913/765157‑765255

cgctATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  >  1:6319413‑M1/1‑50 (MQ=255)

cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  >  1:2395344‑M1/1‑50 (MQ=255)

cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  >  1:1693971‑M1/1‑50 (MQ=255)

 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt                                                 <  1:6460095‑M1/50‑2 (MQ=255)

 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt                                                 <  1:4897977‑M1/50‑2 (MQ=255)

 gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                                                  >  1:2912495‑M1/1‑49 (MQ=255)

  cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta                                                <  1:608153‑M1/50‑3 (MQ=255)

   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               <  1:7167853‑M1/50‑4 (MQ=255)

   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               >  1:1848702‑M1/1‑47 (MQ=255)

   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               <  1:5672158‑M1/50‑4 (MQ=255)

    atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                                              <  1:1475283‑M1/50‑5 (MQ=255)

    atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                                              <  1:5292085‑M1/50‑5 (MQ=255)

    atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                               >  1:3538386‑M1/1‑46 (MQ=255)

     tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                                             <  1:6708629‑M1/50‑6 (MQ=255)

      gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                            >  1:206159‑M1/1‑44 (MQ=255)

       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                           <  1:1111997‑M1/50‑8 (MQ=255)

       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                            <  1:5423812‑M1/49‑7 (MQ=255)

       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                            <  1:2323521‑M1/49‑7 (MQ=255)

        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                                          <  1:6512050‑M1/50‑9 (MQ=255)

        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                           >  1:3879984‑M1/1‑42 (MQ=255)

        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                           >  1:4293043‑M1/1‑42 (MQ=255)

           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                                       >  1:6649404‑M1/1‑39 (MQ=255)

           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                                       >  1:5566309‑M1/1‑39 (MQ=255)

           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                                        <  1:4325877‑M1/49‑11 (MQ=255)

           tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                                        <  1:1836259‑M1/49‑11 (MQ=255)

            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                      >  1:2374427‑M1/1‑38 (MQ=255)

            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                      >  1:3429260‑M1/1‑38 (MQ=255)

            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                      >  1:5251502‑M1/1‑38 (MQ=255)

            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                                       <  1:4947121‑M1/49‑12 (MQ=255)

            cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                                       <  1:1943802‑M1/49‑12 (MQ=255)

             gCTGCGCTATCGGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                     <  1:1740881‑M1/50‑14 (MQ=255)

             gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                     <  1:6669050‑M1/50‑14 (MQ=255)

             gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                                     <  1:3730432‑M1/50‑14 (MQ=255)

             gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                                      <  1:6131245‑M1/49‑13 (MQ=255)

              cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                    <  1:4503740‑M1/50‑15 (MQ=255)

                 cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag                                 >  1:4189254‑M1/1‑33 (MQ=255)

                 cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag                                 >  1:2263491‑M1/1‑33 (MQ=255)

                 cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa                                  <  1:7125176‑M1/49‑17 (MQ=255)

                 cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa                                  <  1:413152‑M1/49‑17 (MQ=255)

                 cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccga                                   <  1:7151071‑M1/48‑16 (MQ=255)

                  gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:835350‑M1/1‑32 (MQ=255)

                  gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:3852312‑M1/1‑32 (MQ=255)

                  gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:1319417‑M1/1‑32 (MQ=255)

                  gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:311373‑M1/1‑32 (MQ=255)

                  gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                <  1:1823971‑M1/50‑19 (MQ=255)

                   cTATCAGGTTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:6853198‑M1/1‑31 (MQ=255)

                   cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc                                >  1:4804130‑M1/1‑31 (MQ=255)

                    tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              >  1:5139452‑M1/1‑30 (MQ=255)

                    tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              >  1:5344346‑M1/1‑30 (MQ=255)

                    tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              >  1:3415629‑M1/1‑30 (MQ=255)

                     aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              >  1:4894629‑M1/1‑29 (MQ=255)

                      tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca                            >  1:2961820‑M1/1‑28 (MQ=255)

                      tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccac                             <  1:2329108‑M1/49‑22 (MQ=255)

                      tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccac                             <  1:3690382‑M1/49‑22 (MQ=255)

                      tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                              <  1:109874‑M1/48‑21 (MQ=255)

                       cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca                            >  1:5349718‑M1/1‑27 (MQ=255)

                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata                          <  1:3556265‑M1/50‑25 (MQ=255)

                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata                          >  1:4038171‑M1/1‑26 (MQ=255)

                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat                           <  1:5231713‑M1/49‑24 (MQ=255)

                         gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat                         <  1:4067467‑M1/50‑26 (MQ=255)

                         gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat                         >  1:323234‑M1/1‑25 (MQ=255)

                          ggTAAA‑TTATAGTCATCGTTATTAtagcaatcaaaccgaagccacatatg                        >  1:4173850‑M1/1‑24 (MQ=255)

                           gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc                       <  1:6147832‑M1/50‑28 (MQ=255)

                               aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgc                     <  1:628058‑M1/47‑30 (MQ=255)

                                attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg                   >  1:6373868‑M1/2‑19 (MQ=255)

                                attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg                   >  1:3674157‑M1/2‑19 (MQ=255)

                                 ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                  <  1:4712772‑M1/50‑33 (MQ=255)

                                 ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                  >  1:2381531‑M1/1‑18 (MQ=255)

                                   ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcc                 <  1:5019037‑M1/49‑34 (MQ=255)

                                    taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccag               <  1:3535524‑M1/50‑36 (MQ=255)

                                    taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccag               <  1:6588837‑M1/50‑36 (MQ=255)

                                     aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc                  >  1:2906715‑M1/1‑14 (MQ=255)

                                      gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat             <  1:1874627‑M1/50‑38 (MQ=255)

                                       tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt            <  1:7317572‑M1/50‑39 (MQ=255)

                                       tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt            <  1:1498116‑M1/50‑39 (MQ=255)

                                       tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt            >  1:675579‑M1/1‑12 (MQ=255)

                                       tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt            <  1:331483‑M1/50‑39 (MQ=255)

                                         aTCGGTATTAtagcaatcaaaccgaatccacatatgcgcggccagattgt          >  1:1159776‑M1/1‑10 (MQ=255)

                                         aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt          <  1:750111‑M1/50‑41 (MQ=255)

                                         aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt          >  1:683867‑M1/1‑10 (MQ=255)

                                         aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg           <  1:3786714‑M1/49‑40 (MQ=255)

                                          tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt         <  1:2412675‑M1/50‑42 (MQ=255)

                                           cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt         >  1:4039954‑M1/1‑8 (MQ=255)

                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga       <  1:6620878‑M1/50‑44 (MQ=255)

                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg        <  1:1107546‑M1/49‑43 (MQ=255)

                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg        <  1:4137618‑M1/49‑43 (MQ=255)

                                             gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttgac      <  1:1906428‑M1/50‑45 (MQ=255)

                                             gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttgac      <  1:2944056‑M1/50‑45 (MQ=255)

                                              tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca     <  1:287460‑M1/50‑46 (MQ=255)

                                              tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgaca     <  1:3170849‑M1/50‑46 (MQ=255)

                                                ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaa   <  1:7008669‑M1/50‑48 (MQ=255)

                                                 tatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag  >  1:2857856‑M1/1‑2 (MQ=255)

CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA  >  NC_000913/765157‑765255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`