| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 98 [0] | [0] 96 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 94 (0.980) | 57/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 | aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT < 1:593583‑M1/50‑1 (MQ=255)aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:577285‑M1/1‑50 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGGGCGCGTc < 1:373052‑M1/50‑2 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc > 1:1374074‑M1/1‑49 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:2336379‑M1/50‑2 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:1624705‑M1/50‑2 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:6401832‑M1/50‑2 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:3366773‑M1/50‑2 (MQ=255) gACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:6346766‑M1/1‑48 (MQ=255) aCATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:7060043‑M1/1‑47 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:2060841‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta < 1:2161147‑M1/50‑6 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta < 1:1845624‑M1/50‑6 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:1868635‑M1/50‑7 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac > 1:6779467‑M1/1‑44 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:2370265‑M1/50‑7 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:1668972‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:5587448‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:3132635‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg < 1:2920289‑M1/49‑8 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:690294‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:4931795‑M1/50‑10 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:2442059‑M1/50‑11 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGTGTcgctacgctag > 1:1219817‑M1/1‑39 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:4096608‑M1/1‑38 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:3206470‑M1/1‑35 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:5607085‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:2061757‑M1/48‑14 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:5876067‑M1/48‑14 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:5168482‑M1/1‑34 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca > 1:301715‑M1/1‑32 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca > 1:5289358‑M1/1‑32 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa < 1:1418252‑M1/50‑20 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa < 1:1932164‑M1/50‑20 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:6014828‑M1/49‑19 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:3991067‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa > 1:2645715‑M1/1‑30 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa > 1:3915401‑M1/1‑30 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:7110918‑M1/1‑29 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:2124606‑M1/1‑29 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:2478515‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:7010381‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:7361746‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:6953916‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:2068738‑M1/1‑27 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa < 1:6827739‑M1/48‑22 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga < 1:4127694‑M1/50‑25 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga > 1:807908‑M1/1‑25 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga > 1:4644293‑M1/1‑25 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:4326664‑M1/1‑23 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaaca < 1:1198694‑M1/50‑29 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaac < 1:860136‑M1/49‑28 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaac < 1:6436586‑M1/49‑28 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaac < 1:2771360‑M1/49‑28 (MQ=255) taAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:7131187‑M1/1‑21 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:4742572‑M1/1‑20 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:474886‑M1/1‑20 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:906882‑M1/1‑20 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:4496526‑M1/49‑31 (MQ=255) aCATACTCGCGAGCGCGTcgctacgttagcaagcaaaaacgaaacaggaa > 1:202755‑M1/1‑18 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa < 1:741463‑M1/50‑33 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:2122683‑M1/1‑17 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:3887470‑M1/1‑17 (MQ=255) aTACTCGGGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaata < 1:3041844‑M1/50‑35 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaata < 1:6624847‑M1/50‑35 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaata < 1:6557748‑M1/50‑35 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaata < 1:3901242‑M1/50‑35 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaata < 1:6067002‑M1/50‑35 (MQ=255) tACTCGCGAGCGCGTcgctacgctagccagcaaaaatgaaacaggaataa > 1:139861‑M1/1‑15 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcagaaatgaaacaggaataa < 1:5019063‑M1/50‑36 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:6203657‑M1/50‑36 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa > 1:6304605‑M1/1‑15 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:449405‑M1/50‑36 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:3810437‑M1/50‑36 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa > 1:2189573‑M1/1‑15 (MQ=255) aCTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat > 1:1802376‑M1/1‑14 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc > 1:4565759‑M1/1‑13 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc < 1:3211691‑M1/50‑38 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg > 1:4143649‑M1/1‑11 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga > 1:968932‑M1/1‑10 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga > 1:4550225‑M1/1‑10 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:6192094‑M1/1‑9 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa < 1:7462140‑M1/50‑42 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:6939619‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:2139115‑M1/1‑8 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg < 1:3505668‑M1/50‑44 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg < 1:3969505‑M1/50‑46 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:60948‑M1/1‑5 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga > 1:4142222‑M1/1‑4 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga < 1:871998‑M1/50‑47 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:2445119‑M1/1‑3 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:564022‑M1/1‑3 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:5683610‑M1/50‑48 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg < 1:5654956‑M1/50‑49 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg < 1:2904828‑M1/50‑49 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg < 1:4941205‑M1/50‑49 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt < 1:6571059‑M1/50‑50 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt < 1:516669‑M1/50‑50 (MQ=255) | AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |