| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 98 [0] | [0] 96 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 94 (0.980) | 57/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979281‑1979378 | agacatcgagcctttttcactgagttattaaacatactcgcgggcgcgtc < 1:373052‑M2/1‑1 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc > 1:1374074‑M2/50‑50 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:3366773‑M2/1‑1 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:1624705‑M2/1‑1 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:2336379‑M2/1‑1 (MQ=255)agacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:6401832‑M2/1‑1 (MQ=255) gacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcg > 1:6346766‑M2/49‑50 (MQ=255) acatcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:7060043‑M2/48‑50 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta < 1:2161147‑M2/5‑1 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta > 1:2060841‑M2/46‑50 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgcta < 1:1845624‑M2/5‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:1868635‑M2/6‑1 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac > 1:6779467‑M2/45‑50 (MQ=255) tcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:2370265‑M2/6‑1 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:3132635‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:5587448‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:1668972‑M2/43‑50 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg < 1:2920289‑M2/7‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:4931795‑M2/9‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:690294‑M2/9‑1 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:2442059‑M2/10‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgtgtCGCTACGCTag > 1:1219817‑M2/40‑50 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:4096608‑M2/39‑49 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:3206470‑M2/36‑50 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaa < 1:5607085‑M2/14‑1 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:5876067‑M2/13‑1 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:2061757‑M2/13‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaag > 1:5168482‑M2/35‑49 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca > 1:301715‑M2/33‑49 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca > 1:5289358‑M2/33‑49 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAgcaagcaa < 1:6014828‑M2/18‑1 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaa < 1:1932164‑M2/19‑1 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaa < 1:1418252‑M2/19‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:3991067‑M2/20‑1 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaa > 1:2645715‑M2/31‑49 (MQ=255) ctgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaa > 1:3915401‑M2/31‑49 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:7110918‑M2/30‑50 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:2124606‑M2/30‑50 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa < 1:6827739‑M2/21‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:2478515‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:7010381‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:2068738‑M2/28‑49 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:7361746‑M2/22‑1 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt < 1:6953916‑M2/22‑1 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa < 1:4127694‑M2/24‑1 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa > 1:4644293‑M2/26‑49 (MQ=255) ttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGa > 1:807908‑M2/26‑49 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:4326664‑M2/24‑49 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAAc < 1:6436586‑M2/27‑1 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAAc < 1:2771360‑M2/27‑1 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAAc < 1:860136‑M2/27‑1 (MQ=255) ttaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACa < 1:1198694‑M2/28‑1 (MQ=255) taaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:7131187‑M2/22‑50 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:906882‑M2/21‑49 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:474886‑M2/21‑49 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:4742572‑M2/21‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:4496526‑M2/30‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGTTAGCAAGCAAAAACGAAACAGGaa > 1:202755‑M2/19‑50 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa < 1:741463‑M2/32‑1 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:2122683‑M2/18‑49 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:3887470‑M2/18‑49 (MQ=255) atactcgggagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:3041844‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:6557748‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:6624847‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:3901242‑M2/34‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 1:6067002‑M2/34‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCCAGCAAAAATGAAACAGGaataa > 1:139861‑M2/16‑50 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAGAAATGAAACAGGaataa < 1:5019063‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:449405‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa > 1:6304605‑M2/16‑50 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:6203657‑M2/35‑1 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa > 1:2189573‑M2/16‑50 (MQ=255) tactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:3810437‑M2/35‑1 (MQ=255) actcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat > 1:1802376‑M2/15‑50 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc < 1:3211691‑M2/37‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:4565759‑M2/14‑50 (MQ=255) cgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg > 1:4143649‑M2/12‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 1:968932‑M2/11‑49 (MQ=255) gcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 1:4550225‑M2/11‑49 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:6192094‑M2/10‑50 (MQ=255) cgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:7462140‑M2/41‑1 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:2139115‑M2/9‑50 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt > 1:6939619‑M2/9‑50 (MQ=255) agcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 1:3505668‑M2/43‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg < 1:3969505‑M2/45‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:60948‑M2/6‑49 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 1:4142222‑M2/5‑50 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa < 1:871998‑M2/46‑1 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt > 1:2445119‑M2/4‑50 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt > 1:564022‑M2/4‑50 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:5683610‑M2/47‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:4941205‑M2/48‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:2904828‑M2/48‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:5654956‑M2/48‑1 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:6571059‑M2/49‑1 (MQ=255) tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:516669‑M2/49‑1 (MQ=255) | TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979281‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |