| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 109 [0] | [0] 105 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 103 (1.080) | 67/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 109 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 | cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:1033145‑M1/1‑50 (MQ=255)cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:3545346‑M1/50‑1 (MQ=255)cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:4315646‑M1/50‑1 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:6184524‑M1/1‑48 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:2153284‑M1/1‑48 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 1:3056149‑M1/49‑3 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:4453221‑M1/1‑47 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca < 1:1930034‑M1/50‑5 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacc < 1:2148378‑M1/50‑7 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:3885132‑M1/49‑6 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac > 1:116449‑M1/1‑44 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca < 1:7479528‑M1/50‑8 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca > 1:4799645‑M1/1‑43 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca < 1:7248272‑M1/50‑8 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca < 1:2413193‑M1/50‑8 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGG‑TATATttcaccac > 1:3737486‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:1416527‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac < 1:1092372‑M1/50‑9 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 1:4817750‑M1/1‑41 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:3110887‑M1/50‑11 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 1:4631960‑M1/1‑38 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat < 1:6818586‑M1/50‑13 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca < 1:6006865‑M1/49‑12 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca < 1:4460275‑M1/49‑12 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca < 1:2941123‑M1/49‑12 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca < 1:2518915‑M1/49‑12 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:4071449‑M1/1‑37 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 1:3618035‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:3095897‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 1:2810786‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:4896731‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:4049154‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:7443776‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 1:669444‑M1/48‑14 (MQ=255) tGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcc < 1:5609480‑M1/50‑17 (MQ=255) tGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcc < 1:6557558‑M1/50‑17 (MQ=255) tGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:6884719‑M1/1‑34 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca < 1:3825203‑M1/49‑18 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 1:6170531‑M1/1‑32 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 1:2400147‑M1/1‑32 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:2810320‑M1/50‑20 (MQ=255) aTTGTCCCGACGCTTACTATTGGTTATATttcaccactcattgccacat < 1:1541626‑M1/49‑21 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt < 1:3735419‑M1/50‑22 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 1:2419287‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat < 1:6590366‑M1/49‑21 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc > 1:2915822‑M1/1‑28 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc < 1:2609580‑M1/50‑23 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc > 1:4721318‑M1/1‑28 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc < 1:1616999‑M1/50‑23 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:3287381‑M1/1‑27 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:2603993‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:4698525‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:2030449‑M1/50‑26 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt > 1:3989795‑M1/1‑23 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt > 1:4854599‑M1/1‑23 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt < 1:4267963‑M1/50‑28 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt > 1:1669892‑M1/1‑23 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg < 1:1839427‑M1/49‑27 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg < 1:6691207‑M1/50‑29 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg < 1:6400899‑M1/50‑29 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattcccacattccttgtg > 1:7307887‑M1/1‑22 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:4486702‑M1/1‑21 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:2949323‑M1/1‑21 (MQ=255) aCGCTTACTATTGGTTATATttcaccgctcattgccacattccttgtgta < 1:84992‑M1/50‑31 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:6633670‑M1/50‑31 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:1033749‑M1/50‑31 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:868334‑M1/1‑20 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:1099063‑M1/50‑32 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:1848699‑M1/50‑32 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:2182023‑M1/1‑18 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:3973551‑M1/1‑18 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:5425784‑M1/1‑16 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:5910105‑M1/1‑16 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:5500472‑M1/1‑16 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc < 1:289586‑M1/48‑35 (MQ=255) tATTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:6719342‑M1/1‑12 (MQ=255) aTTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:7151525‑M1/1‑11 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca > 1:3226182‑M1/1‑10 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcc < 1:4543231‑M1/49‑40 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcc < 1:7400201‑M1/49‑40 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagc < 1:6186333‑M1/48‑39 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccatt > 1:3216216‑M1/1‑8 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccatt > 1:3499138‑M1/1‑8 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccatt > 1:5562927‑M1/1‑8 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccat < 1:1267744‑M1/49‑42 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccat < 1:2128294‑M1/49‑42 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt < 1:3378903‑M1/50‑44 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt < 1:2752555‑M1/50‑45 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:6187215‑M1/1‑6 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:6775736‑M1/1‑6 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:7279546‑M1/1‑6 (MQ=255) tataTttcaccactccttgccacattccttgtgtatagccagccattttt > 1:69702‑M1/1‑5 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt > 1:2470073‑M1/1‑4 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:2875546‑M1/49‑46 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 1:6684079‑M1/1‑3 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta < 1:1460456‑M1/50‑48 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:5314497‑M1/1‑2 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:6632029‑M1/1‑2 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:1781878‑M1/1‑1 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:3372505‑M1/1‑1 (MQ=255) | CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |