| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 79 [0] | [0] 78 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 71 (0.770) | 55/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 | gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:4558258‑M1/1‑50 (MQ=255)gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:5623554‑M1/1‑50 (MQ=255)gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:3998792‑M1/1‑50 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta < 1:2707422‑M1/50‑3 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:6557456‑M1/1‑48 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:234680‑M1/1‑47 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 1:2646775‑M1/1‑46 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:6400356‑M1/49‑5 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:4051443‑M1/49‑5 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat < 1:1138171‑M1/50‑7 (MQ=255) tGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatcc > 1:1977160‑M1/1‑42 (MQ=255) tGTTTCTTTCTGCTCACGCGCGGCGATATAGAATCCAAACATtataatcc > 1:2755542‑M1/1‑42 (MQ=255) gTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc > 1:7144527‑M1/1‑41 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct > 1:4106022‑M1/1‑40 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc < 1:4122417‑M1/49‑10 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAACTCAAACATtataatccct < 1:3386405‑M1/50‑11 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:4515360‑M1/49‑12 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:5520021‑M1/1‑37 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg < 1:6477769‑M1/49‑13 (MQ=255) tttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:2623336‑M1/1‑36 (MQ=255) ttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga > 1:212781‑M1/1‑35 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:2468218‑M1/48‑15 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:2425762‑M1/48‑15 (MQ=255) ctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:761678‑M1/1‑33 (MQ=255) ctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgac < 1:3944038‑M1/49‑17 (MQ=255) gCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt > 1:5451607‑M1/1‑31 (MQ=255) gCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt > 1:3365684‑M1/1‑31 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta < 1:3815338‑M1/49‑20 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt < 1:6431999‑M1/48‑19 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg < 1:3022088‑M1/47‑18 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg < 1:767442‑M1/47‑18 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:4860430‑M1/1‑29 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa < 1:6643607‑M1/50‑24 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa > 1:4321999‑M1/1‑27 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:1980161‑M1/49‑23 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac > 1:5640524‑M1/1‑26 (MQ=255) gcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaact < 1:2083361‑M1/50‑26 (MQ=255) gcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaact > 1:5233451‑M1/1‑25 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:417600‑M1/1‑23 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:1531158‑M1/1‑23 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:2595032‑M1/1‑23 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 1:3706640‑M1/1‑22 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 1:1512726‑M1/1‑22 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa < 1:5707697‑M1/50‑30 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa < 1:895974‑M1/50‑30 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:435727‑M1/1‑21 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaacactgcaa > 1:7284309‑M1/1‑20 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaa < 1:6263077‑M1/50‑31 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:1929008‑M1/1‑19 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:1947723‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:3597620‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:637570‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:546715‑M1/1‑18 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:4290028‑M1/1‑18 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca < 1:6826097‑M1/50‑34 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaa < 1:1057416‑M1/50‑37 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 1:4369996‑M1/49‑36 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:3961106‑M1/1‑14 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:3038593‑M1/1‑13 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt > 1:5968835‑M1/1‑12 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc < 1:5251750‑M1/50‑41 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:4757108‑M1/1‑10 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:6275429‑M1/50‑42 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:6579546‑M1/1‑8 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:7127895‑M1/49‑43 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:3331840‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:5599714‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:6903858‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:1435967‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:6670804‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:4553994‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:6936118‑M1/49‑44 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgca < 1:2317226‑M1/50‑47 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:5526477‑M1/1‑4 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 1:5240734‑M1/50‑48 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg < 1:6243322‑M1/50‑49 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:3254515‑M1/50‑50 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg > 1:7081729‑M1/1‑1 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg > 1:4919153‑M1/1‑1 (MQ=255) | GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |