| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 79 [0] | [0] 78 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 71 (0.770) | 55/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
CACCAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGAA > NC_000913/3469806‑3469903 | gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta > 1:6557456‑M2/49‑50 (MQ=255)gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta < 1:2707422‑M2/2‑1 (MQ=255) tgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta > 1:234680‑M2/48‑49 (MQ=255) gacctgtttctttctgctcacgcgcggcgatatagaattcaaacattat > 1:2646775‑M2/47‑49 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacattata < 1:4051443‑M2/4‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacattata < 1:6400356‑M2/4‑1 (MQ=255) cctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAAt < 1:1138171‑M2/6‑1 (MQ=255) tgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAATcc > 1:1977160‑M2/43‑50 (MQ=255) tgtttctttctgctcacgcgcggcgatatagaatccaaacatTATAATcc > 1:2755542‑M2/43‑50 (MQ=255) gtttctttctgctcacgcgcggcgatatagaattcaaacatTATAATccc > 1:7144527‑M2/42‑50 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATccc < 1:4122417‑M2/9‑1 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCt > 1:4106022‑M2/41‑50 (MQ=255) tttctttctgctcacgcgcggcgatatagaactcaaacatTATAATCCCt < 1:3386405‑M2/10‑1 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt < 1:4515360‑M2/11‑1 (MQ=255) ctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 1:5520021‑M2/38‑50 (MQ=255) ctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg < 1:6477769‑M2/12‑1 (MQ=255) tttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 1:2623336‑M2/37‑49 (MQ=255) ttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa > 1:212781‑M2/36‑50 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 1:2425762‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 1:2468218‑M2/14‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGAc < 1:3944038‑M2/16‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg > 1:761678‑M2/34‑50 (MQ=255) gctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt > 1:5451607‑M2/32‑49 (MQ=255) gctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt > 1:3365684‑M2/32‑49 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg < 1:3022088‑M2/17‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg < 1:767442‑M2/17‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt < 1:6431999‑M2/18‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTa < 1:3815338‑M2/19‑1 (MQ=255) tcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaa > 1:4860430‑M2/30‑49 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaaa > 1:4321999‑M2/28‑50 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaaa < 1:6643607‑M2/23‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 1:1980161‑M2/22‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAAc > 1:5640524‑M2/27‑50 (MQ=255) gcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACt > 1:5233451‑M2/26‑50 (MQ=255) gcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACt < 1:2083361‑M2/25‑1 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg > 1:1531158‑M2/24‑49 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg > 1:417600‑M2/24‑49 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg > 1:2595032‑M2/24‑49 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGc > 1:3706640‑M2/23‑49 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGc > 1:1512726‑M2/23‑49 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa < 1:5707697‑M2/29‑1 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa < 1:895974‑M2/29‑1 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:435727‑M2/22‑49 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAACACTGcaa > 1:7284309‑M2/21‑49 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaa < 1:6263077‑M2/30‑1 (MQ=255) cgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa > 1:1929008‑M2/20‑50 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac < 1:1947723‑M2/32‑1 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac < 1:637570‑M2/32‑1 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac < 1:3597620‑M2/32‑1 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa > 1:546715‑M2/19‑49 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa > 1:4290028‑M2/19‑49 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca < 1:6826097‑M2/33‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaaa < 1:1057416‑M2/36‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaa < 1:4369996‑M2/35‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:3961106‑M2/15‑48 (MQ=255) agaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAg > 1:3038593‑M2/14‑50 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt > 1:5968835‑M2/13‑50 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:4757108‑M2/11‑50 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc < 1:5251750‑M2/40‑1 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 1:6275429‑M2/41‑1 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa > 1:6579546‑M2/9‑50 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:7127895‑M2/42‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:1435967‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:4553994‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:6936118‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:6670804‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:6903858‑M2/7‑50 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg < 1:5599714‑M2/44‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg < 1:3331840‑M2/44‑1 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:5526477‑M2/5‑48 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCa < 1:2317226‑M2/46‑1 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg < 1:5240734‑M2/47‑1 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAgg < 1:6243322‑M2/48‑1 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAgg > 1:7081729‑M2/2‑49 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAgg > 1:4919153‑M2/2‑49 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGa < 1:3254515‑M2/49‑1 (MQ=255) tataATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGaa > 1:5923604/1‑50 (MQ=255) tataATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGaa > 1:3320027/1‑50 (MQ=255) | CACCAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGAA > NC_000913/3469806‑3469903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |