| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,651,293 | Δ2,422 bp | [yhiS]–yhiS | [yhiS], insH‑11, yhiS | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3651293 | 3653714 | 2422 | 96 [0] | [0] 94 | [yhiS]–yhiS | [yhiS],insH‑11,yhiS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3651292 | 0 (0.000) | 87 (0.930) | 57/94 | 0.0 | 100% | pseudogene (2/746 nt) | yhiS | putative uncharacterized protein YhiS |
| ? | NC_000913 | 3653715 = | 0 (0.000) | intergenic (+2/‑246) | yhiS/slp | putative uncharacterized protein YhiS/starvation lipoprotein | |||||
TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT > NC_000913/3651243‑3651341 | tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT < 1:3051441‑M1/50‑1 (MQ=255)tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT < 1:4193367‑M1/50‑1 (MQ=255) ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa > 1:7149964‑M1/1‑49 (MQ=255) ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa > 1:7059405‑M1/1‑49 (MQ=255) cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat < 1:1635964‑M1/50‑3 (MQ=255) cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat < 1:4712763‑M1/50‑3 (MQ=255) aaTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt > 1:1418638‑M1/1‑47 (MQ=255) aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt > 1:4987317‑M1/1‑46 (MQ=255) ttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat > 1:1815669‑M1/1‑44 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat < 1:647186‑M1/49‑7 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat < 1:6017584‑M1/49‑7 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat > 1:4544947‑M1/1‑43 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat > 1:5819243‑M1/1‑43 (MQ=255) aaaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatt < 1:773652‑M1/49‑8 (MQ=255) aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat < 1:3817975‑M1/50‑10 (MQ=255) aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta < 1:4389040‑M1/49‑9 (MQ=255) aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta < 1:5839789‑M1/49‑9 (MQ=255) aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta < 1:5938277‑M1/49‑9 (MQ=255) aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatt < 1:568886‑M1/50‑11 (MQ=255) aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat > 1:5841311‑M1/1‑40 (MQ=255) cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatta < 1:4300381‑M1/50‑12 (MQ=255) cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatta < 1:6796301‑M1/50‑12 (MQ=255) cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat > 1:2390080‑M1/1‑39 (MQ=255) aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag < 1:4346763‑M1/50‑13 (MQ=255) aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag > 1:1994281‑M1/1‑38 (MQ=255) cTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca > 1:3601661‑M1/1‑36 (MQ=255) ttAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac > 1:5119938‑M1/1‑35 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt > 1:5215367‑M1/1‑33 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact < 1:5580526‑M1/49‑17 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac < 1:1016003‑M1/48‑16 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac < 1:2884515‑M1/48‑16 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagc < 1:3646721‑M1/46‑14 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagc < 1:5199206‑M1/46‑14 (MQ=255) aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagc < 1:3561611‑M1/46‑14 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt < 1:4088893‑M1/50‑19 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt < 1:3648486‑M1/50‑19 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt < 1:508512‑M1/49‑18 (MQ=255) cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta < 1:1015258‑M1/50‑20 (MQ=255) cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta < 1:3540045‑M1/50‑20 (MQ=255) aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat < 1:5138245‑M1/50‑21 (MQ=255) aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta > 1:1550692‑M1/1‑30 (MQ=255) tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat > 1:3177468‑M1/1‑29 (MQ=255) aaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataat > 1:4021046‑M1/1‑27 (MQ=255) aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataatc < 1:6960146‑M1/50‑25 (MQ=255) aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataatc < 1:4306378‑M1/50‑25 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca > 1:6171290‑M1/1‑25 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca < 1:5948595‑M1/50‑26 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca < 1:4831390‑M1/50‑26 (MQ=255) cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat < 1:4859445‑M1/50‑27 (MQ=255) cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat < 1:5985375‑M1/50‑27 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt < 1:4882424‑M1/50‑28 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt > 1:3251315‑M1/1‑23 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt < 1:5537125‑M1/50‑28 (MQ=255) aaTGATGAATAAGGAATTTTATattgattattagcactttataatcattg < 1:2379179‑M1/50‑29 (MQ=255) aaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt > 1:427414‑M1/1‑22 (MQ=255) tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa < 1:6506930‑M1/50‑31 (MQ=255) tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa < 1:1812750‑M1/50‑31 (MQ=255) tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa < 1:7350774‑M1/50‑31 (MQ=255) gatgaATAAGGAATTTTATattgattattagcactttataatcattgaa > 1:6005514‑M1/1‑19 (MQ=255) gatgaATAAGGAATTTTATattgattattagcactttataatcattgaa > 1:979287‑M1/1‑19 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaat > 1:5522980‑M1/1‑18 (MQ=255) tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa < 1:5192506‑M1/50‑34 (MQ=255) tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa < 1:5594253‑M1/50‑34 (MQ=255) tgaATAAGGAATTTTATattgattattagcactttataatcattgaata > 1:571633‑M1/1‑17 (MQ=255) gaATAAGGAATTTTATattgattattagcactttataatcattgaataa > 1:322160‑M1/1‑16 (MQ=255) gaATAAGGAATTTTATattgattattagcactttataatcattgaataa > 1:5717785‑M1/1‑16 (MQ=255) aaTAAGGAATTTTATattgattattagcactttataatcattgaataaaa < 1:526216‑M1/50‑36 (MQ=255) aaTAAGGAATTTTATattgattattagcactttataatcattgaataaaa < 1:1977249‑M1/50‑36 (MQ=255) aaTAAGGAATTTTATattgattattagcactttataatcattgaataaa > 1:1961808‑M1/1‑15 (MQ=255) tAAGGAATTTTATattgattattagcactttataatcattgaataaaaat < 1:5606904‑M1/50‑38 (MQ=255) tAAGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:1101971‑M1/1‑13 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaatag < 1:2941947‑M1/50‑40 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaatag < 1:6036387‑M1/50‑40 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:467915‑M1/1‑11 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:500330‑M1/1‑11 (MQ=255) aGGAATTGTATattgattattagcactttataagcattgaataaaaatag < 1:5194958‑M1/50‑40 (MQ=255) ggAATTTTATattgattattagcactttataatcattgaataaaaataga < 1:6665486‑M1/50‑41 (MQ=255) ggAATTTTATattgattattagcactttataatcattgaataaaaataga < 1:5029172‑M1/50‑41 (MQ=255) gAATTTTATattgattattagcactttataatcattgaataaaaatagat < 1:3804952‑M1/50‑42 (MQ=255) gAATTTTATattgattattagcactttataatcattgaataaaaatagat < 1:2207109‑M1/50‑42 (MQ=255) aaTTTTATattgattattagcactttataatcattgaataaaaatagatt > 1:7390316‑M1/1‑8 (MQ=255) ttttATattgattattagcactttataatcattgaataaaaatagatttt < 1:1880299‑M1/50‑45 (MQ=255) ttttATattgattattagcactttataatcattgaataaaaatagattt > 1:6989746‑M1/1‑6 (MQ=255) ttttATattgattattagcactttataatcattgaataaaaatagattt > 1:5369414‑M1/1‑6 (MQ=255) tttATattgattattagcactttataatcattgaataaaaatagatttta > 1:2677796‑M1/1‑5 (MQ=255) tttATattgattattagcactttataatcattgaataaaaatagatttta > 1:3807214‑M1/1‑5 (MQ=255) tttATattgattattagcactttataatcattgaataaaaatagatttta > 1:161909‑M1/1‑5 (MQ=255) ttATattgattattagcactttataatcattgaataaaaatagattttat > 1:3383344‑M1/1‑4 (MQ=255) tatattgattattagcactttataatcattgaataaaaatagattttat < 1:2317369‑M1/49‑47 (MQ=255) atattgattattagcactttataatcattgaataaaaatagattttatg < 1:3831302‑M1/49‑48 (MQ=255) atattgattattagcactttataatcattgaataaaaatagattttatg > 1:1927711‑M1/1‑2 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 1:4659257‑M1/50‑50 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 1:1198637‑M1/50‑50 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta > 1:6111167‑M1/1‑1 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 1:1164414‑M1/50‑50 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgt < 1:5423543‑M1/49‑49 (MQ=255) | TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT > NC_000913/3651243‑3651341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |