| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 117 [0] | [0] 117 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 115 (1.200) | 64/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 117 total aligned reads displayed.
CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAA > NC_000913/3761943‑3762041 | cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:5071313‑M1/50‑1 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:5168727‑M1/1‑49 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:6792840‑M1/50‑2 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:3737538‑M1/1‑48 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:479303‑M1/1‑48 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa < 1:3727799‑M1/50‑5 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:6217464‑M1/1‑46 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:4882094‑M1/1‑46 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:520780‑M1/50‑6 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat > 1:3632827‑M1/1‑45 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:5979618‑M1/50‑6 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:4906573‑M1/50‑6 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:4236270‑M1/50‑7 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:3821856‑M1/50‑7 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat < 1:3998888‑M1/49‑9 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc > 1:5977379‑M1/1‑40 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcc < 1:4106‑M1/49‑11 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcc > 1:6971346‑M1/1‑39 (MQ=255) tGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaa < 1:7049733‑M1/50‑13 (MQ=255) tGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaa < 1:6753086‑M1/50‑13 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat < 1:6048320‑M1/50‑15 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat < 1:6225895‑M1/50‑15 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa > 1:2147091‑M1/1‑36 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatacaaa < 1:1307465‑M1/49‑14 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataa < 1:6815182‑M1/50‑17 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataa < 1:1673962‑M1/50‑17 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:3750126‑M1/1‑33 (MQ=255) gTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaag < 1:2430095‑M1/50‑19 (MQ=255) gTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaag < 1:6364522‑M1/50‑19 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:2512351‑M1/50‑20 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:475307‑M1/1‑31 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:4769265‑M1/1‑31 (MQ=255) ccTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:3085040‑M1/1‑30 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:691702‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:6961691‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat < 1:222547‑M1/49‑21 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:1151528‑M1/1‑27 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:1805946‑M1/1‑27 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:7088509‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:3509341‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:4443871‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:3237360‑M1/48‑23 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:6100198‑M1/48‑23 (MQ=255) gtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg > 1:2533235‑M1/1‑25 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca < 1:288594‑M1/50‑27 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca > 1:5860306‑M1/1‑24 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca < 1:3480895‑M1/50‑27 (MQ=255) tgCGAGGAAAAATATCAGTAAGGCtcaatgatccaaataaagataatgca < 1:5645494‑M1/50‑27 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:6455548‑M1/1‑22 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:6845187‑M1/1‑22 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc < 1:2938780‑M1/50‑29 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc < 1:1356804‑M1/50‑29 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:4621956‑M1/49‑28 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:6855591‑M1/49‑28 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:3512560‑M1/49‑28 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcc < 1:1432166‑M1/50‑30 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcc < 1:4979230‑M1/50‑30 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:5836094‑M1/1‑21 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:3684199‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:4662206‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:3263693‑M1/1‑20 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag > 1:783155‑M1/1‑19 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:3337261‑M1/50‑32 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:6317455‑M1/50‑32 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:1945036‑M1/50‑32 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc < 1:3734480‑M1/50‑33 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc > 1:6471440‑M1/1‑18 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct < 1:871160‑M1/50‑34 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:2721667‑M1/1‑17 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg < 1:626348‑M1/50‑35 (MQ=255) aaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg < 1:5564696‑M1/50‑36 (MQ=255) aaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg > 1:606976‑M1/1‑15 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:5556105‑M1/1‑14 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:924267‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:1597913‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataaggcatccagctggtc < 1:6845291‑M1/50‑38 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca > 1:4541283‑M1/1‑12 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:3147211‑M1/50‑41 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:2218969‑M1/49‑40 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:1457855‑M1/49‑40 (MQ=255) cAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc > 1:2586725‑M1/1‑9 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct < 1:6242477‑M1/50‑43 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:5202602‑M1/1‑8 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:3771214‑M1/1‑8 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:5045426‑M1/50‑44 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:1580619‑M1/50‑44 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:4768396‑M1/50‑44 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:4510045‑M1/1‑7 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:7057501‑M1/1‑7 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:2366382‑M1/1‑7 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:2239964‑M1/1‑7 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:5765537‑M1/50‑45 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:6409345‑M1/50‑45 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttagc < 1:7434576‑M1/50‑47 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag < 1:3638083‑M1/49‑46 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:2644187‑M1/1‑4 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag < 1:1618935‑M1/50‑49 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag < 1:100403‑M1/50‑49 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagca < 1:7415628‑M1/49‑48 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcagc < 1:5229765‑M1/50‑50 (MQ=255) | CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAA > NC_000913/3761943‑3762041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |