| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 58 [0] | [0] 53 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 52 (0.560) +GA |
40/94 | 0.3 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > NC_000913/3136333‑3136428 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa > 1:7170707‑M2/50‑50 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:4169679‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:2274679‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:6350781‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:6567206‑M2/2‑1 (MQ=255) tctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:5052981‑M2/46‑49 (MQ=255) cagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt > 1:177479‑M2/43‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt > 1:5511504‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:4847144‑M2/7‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:6173640‑M2/41‑50 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 1:4580590‑M2/10‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:2109856‑M2/40‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg > 1:4180869‑M2/39‑49 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa < 1:6362382‑M2/13‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt > 1:5820561‑M2/37‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:4928561‑M2/36‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:4227211‑M2/36‑50 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:798434‑M2/35‑49 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:2200317‑M2/35‑49 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:4540480‑M2/34‑50 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:6785073‑M2/34‑50 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:1981548‑M2/33‑50 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:1664367‑M2/33‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg < 1:1525403‑M2/19‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg < 1:3101157‑M2/19‑1 (MQ=255) tcaatttgtgtctcccgcagcgcatagaACGCCATTTTGAATTTACGAAc > 1:6444694‑M2/29‑50 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:2968449‑M2/22‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:2707646‑M2/26‑1 (MQ=255) ttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg > 1:7410459‑M2/24‑50 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt < 1:7150999‑M2/30‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt < 1:2145221‑M2/30‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAtt < 1:6259342‑M2/31‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 1:5134136‑M2/32‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 1:6869232‑M2/32‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa > 1:6525512‑M2/19‑50 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa > 1:7308394‑M2/19‑50 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt < 1:5899367‑M2/33‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:205763‑M2/15‑50 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt < 1:1256468‑M2/37‑1 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:3240581‑M2/14‑50 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:6239733‑M2/39‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc > 1:3228434‑M2/11‑50 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACt < 1:6840485‑M2/41‑1 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACt > 1:3321882‑M2/10‑50 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt < 1:6313132‑M2/42‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:46166‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:5247135‑M2/8‑49 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:7223396‑M2/8‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:2487175‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:7437890‑M2/44‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:4245033‑M2/6‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:6816933‑M2/46‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:3657732‑M2/47‑1 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > NC_000913/3136333‑3136428 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |