| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 58 [0] | [0] 53 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 52 (0.560) +GA |
40/94 | 0.3 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCAC > NC_000913/3110631‑3110727 | cAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg < 1:7012821‑M1/50‑2 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:7389745‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:5272723‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:1228650‑M1/1‑48 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:3851721‑M1/1‑48 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:6228768‑M1/1‑48 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa > 1:7170707‑M1/1‑47 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:6567206‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:2274679‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:4169679‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:6350781‑M1/50‑5 (MQ=255) tctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:5052981‑M1/1‑43 (MQ=255) cagcagCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatt > 1:177479‑M1/1‑40 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt > 1:5511504‑M1/1‑39 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccat < 1:4847144‑M1/48‑10 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:6173640‑M1/1‑38 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt < 1:4580590‑M1/50‑13 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:2109856‑M1/1‑37 (MQ=255) agcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg > 1:4180869‑M1/1‑36 (MQ=255) gcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaa < 1:6362382‑M1/50‑16 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat > 1:5820561‑M1/1‑34 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt > 1:4227211‑M1/1‑33 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt > 1:4928561‑M1/1‑33 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt > 1:798434‑M1/1‑32 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt > 1:2200317‑M1/1‑32 (MQ=255) tGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattta > 1:6785073‑M1/1‑31 (MQ=255) tGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaattta > 1:4540480‑M1/1‑31 (MQ=255) gACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:1981548‑M1/1‑30 (MQ=255) gACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:1664367‑M1/1‑30 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg < 1:3101157‑M1/50‑22 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacg < 1:1525403‑M1/50‑22 (MQ=255) tCAATTTGTGTCTCCCGCAGCGCATAgaacgccattttgaatttacgaac > 1:6444694‑M1/1‑26 (MQ=255) tCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaac < 1:2968449‑M1/50‑25 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:2707646‑M1/50‑29 (MQ=255) ttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg > 1:7410459‑M1/1‑21 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat < 1:7150999‑M1/50‑33 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat < 1:2145221‑M1/50‑33 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatta < 1:6869232‑M1/50‑35 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatta > 1:6525512‑M1/1‑16 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatta > 1:7308394‑M1/1‑16 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatta < 1:5134136‑M1/50‑35 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatt < 1:6259342‑M1/49‑34 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattat < 1:5899367‑M1/49‑36 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag > 1:205763‑M1/1‑12 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt < 1:1256468‑M1/50‑40 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:3240581‑M1/1‑11 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga < 1:6239733‑M1/50‑42 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtgac > 1:3228434‑M1/1‑8 (MQ=255) gcgcATAgaacgccattttgaatttacgaacggacgcattatcagtgact < 1:6840485‑M1/50‑44 (MQ=255) gcgcATAgaacgccattttgaatttacgaacggacgcattatcagtgact > 1:3321882‑M1/1‑7 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt < 1:6313132‑M1/50‑45 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 1:46166‑M1/50‑46 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:5247135‑M1/1‑5 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:7223396‑M1/1‑5 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttta < 1:7437890‑M1/50‑47 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt > 1:2487175‑M1/1‑4 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcattatcagtgactttaa > 1:4245033‑M1/1‑3 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac < 1:6816933‑M1/50‑49 (MQ=255) | CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCAC > NC_000913/3110631‑3110727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |