BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,720,634	Δ1,442 bp	IS150‑mediated	insJ–insK	insJ, insK

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3720634	3722075	1442	88 [0]	[0] 87	insJ–insK	insJ,insK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3720633	0 (0.000)	87 (0.890)	54/98	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region
*	?	NC_000913	3722076 =	0 (0.000)	87 (0.890)	54/98	0.0	100%	intergenic (+27/+252)	insK/glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

TATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  NC_000913/3720585‑3720682

tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 >  1:5390924‑M1/1‑48 (MQ=255)

  tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   <  1:5141427/46‑1 (MQ=255)

  tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               >  1:127983‑M1/1‑46 (MQ=255)

  tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               <  1:2100711‑M1/50‑5 (MQ=255)

  tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                <  1:6325180‑M1/49‑4 (MQ=255)

  tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                <  1:1940447‑M1/49‑4 (MQ=255)

   atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                              >  1:7406155‑M1/1‑45 (MQ=255)

     ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  1:6767880‑M1/1‑43 (MQ=255)

     ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  1:6692748‑M1/1‑43 (MQ=255)

     ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  1:4588673‑M1/1‑43 (MQ=255)

      tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga                                           >  1:6311609‑M1/1‑42 (MQ=255)

      tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga                                           >  1:5420523‑M1/1‑42 (MQ=255)

      tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg                                            <  1:4079106‑M1/49‑8 (MQ=255)

           cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  1:2833557‑M1/49‑13 (MQ=255)

           cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:3035188‑M1/2‑38 (MQ=255)

           cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  1:4235289‑M1/49‑13 (MQ=255)

           cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  1:7443578‑M1/49‑13 (MQ=255)

           cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatt                                         <  1:2224843‑M1/47‑11 (MQ=255)

            gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  1:2158982‑M1/50‑14 (MQ=255)

            gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  1:5885046‑M1/50‑14 (MQ=255)

            gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  1:2900451‑M1/50‑14 (MQ=255)

            gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:979530‑M1/1‑37 (MQ=255)

             cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatc                                     >  1:5733412‑M1/1‑36 (MQ=255)

              aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:4634451‑M1/50‑16 (MQ=255)

              aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:381358‑M1/50‑16 (MQ=255)

              aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    >  1:3086825‑M1/1‑35 (MQ=255)

              aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    >  1:4521040‑M1/1‑35 (MQ=255)

              aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:2035428‑M1/50‑16 (MQ=255)

              aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    >  1:2013996‑M1/1‑35 (MQ=255)

               ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   >  1:5835659‑M1/1‑34 (MQ=255)

                tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   >  1:1503604‑M1/1‑33 (MQ=255)

                 cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                  <  1:7313774‑M1/49‑18 (MQ=255)

                  ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttctagtcct                                >  1:21864‑M1/1‑31 (MQ=255)

                  ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtca                                 <  1:1667206‑M1/49‑19 (MQ=255)

                  ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtca                                 <  1:253428‑M1/49‑19 (MQ=255)

                   cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                               <  1:4466821‑M1/50‑21 (MQ=255)

                   cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                               <  1:2759746‑M1/50‑21 (MQ=255)

                   cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                               <  1:6173754‑M1/50‑21 (MQ=255)

                    aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              >  1:6491572‑M1/1‑29 (MQ=255)

                     gCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtg                             >  1:407235‑M1/1‑28 (MQ=255)

                      cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                            >  1:6604364‑M1/1‑27 (MQ=255)

                       ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           >  1:1709661‑M1/1‑26 (MQ=255)

                        tcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          >  1:279421‑M1/1‑25 (MQ=255)

                        tcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          >  1:1080681‑M1/1‑25 (MQ=255)

                        tcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          >  1:2968446‑M1/1‑25 (MQ=255)

                         cctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggc                         >  1:6509575‑M1/1‑24 (MQ=255)

                          ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                        <  1:288901‑M1/50‑28 (MQ=255)

                          ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                        <  1:2633105‑M1/50‑28 (MQ=255)

                          ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                        <  1:2578820‑M1/50‑28 (MQ=255)

                          ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          <  1:4638492‑M1/48‑26 (MQ=255)

                            gtgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttt                      >  1:2100016‑M1/1‑21 (MQ=255)

                             tgtTGATTTCCAACGAGTATaactttgttttatagtcaggtggggctttt                     >  1:7400718‑M1/1‑20 (MQ=255)

                             tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttt                      <  1:2671035‑M1/49‑30 (MQ=255)

                             tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttt                      <  1:440833‑M1/49‑30 (MQ=255)

                              gtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttc                    >  1:6779010‑M1/1‑19 (MQ=255)

                               ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttct                   >  1:552941‑M1/1‑18 (MQ=255)

                               ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttct                   <  1:3144905‑M1/50‑33 (MQ=255)

                               ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttc                    <  1:5111379‑M1/49‑32 (MQ=255)

                               ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttc                    <  1:7365849‑M1/49‑32 (MQ=255)

                                tGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctc                  >  1:1091647‑M1/1‑17 (MQ=255)

                                 gATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctc                  <  1:2135797‑M1/49‑34 (MQ=255)

                                  aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctctg                >  1:5464434‑M1/1‑15 (MQ=255)

                                  aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctctg                <  1:5904960‑M1/50‑36 (MQ=255)

                                  aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  1:5174908‑M1/49‑35 (MQ=255)

                                  aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  1:2781185‑M1/49‑35 (MQ=255)

                                   tttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgt               >  1:7005001‑M1/1‑14 (MQ=255)

                                   tttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgt               >  1:3672293‑M1/1‑14 (MQ=255)

                                     tCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgtc              <  1:2431463‑M1/49‑38 (MQ=255)

                                        aaCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcc          >  1:4765998‑M1/1‑9 (MQ=255)

                                         aCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcct         >  1:6649629‑M1/1‑8 (MQ=255)

                                         aCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcct         <  1:6755557‑M1/50‑43 (MQ=255)

                                          cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        <  1:3691467‑M1/50‑44 (MQ=255)

                                          cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        >  1:60184‑M1/1‑7 (MQ=255)

                                          cGAGTATaacgttgagttatagtcaggtggggcttttctctgtctgcctt        <  1:5097468‑M1/50‑44 (MQ=255)

                                           gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       <  1:790012‑M1/50‑45 (MQ=255)

                                           gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       <  1:6619547‑M1/50‑45 (MQ=255)

                                           gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       >  1:6627732‑M1/1‑6 (MQ=255)

                                           gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       >  1:3134666‑M1/1‑6 (MQ=255)

                                            aGTATaactttgatttatagtcaggtggggcttttctctgtctgcctttc      <  1:1004728‑M1/50‑46 (MQ=255)

                                            aGTATaactttgatttatagtcaggtggggcttttctctgtctgcctttc      <  1:3949874‑M1/50‑46 (MQ=255)

                                             gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg     >  1:1936241‑M1/1‑4 (MQ=255)

                                             gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg     <  1:6177896‑M1/50‑47 (MQ=255)

                                             gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg     <  1:433271‑M1/50‑47 (MQ=255)

                                              tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    <  1:1739797‑M1/50‑48 (MQ=255)

                                              tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    >  1:4819978‑M1/1‑3 (MQ=255)

                                               ataactttgatttatagtcaggtggggcttttctctgtctgcctttcggt   >  1:5336038‑M1/1‑2 (MQ=255)

                                                taactttgatttatagtcaggtggggcttttctctgtctgcctttcggtg  <  1:6131354‑M1/50‑50 (MQ=255)

                                                taactttgatttatagtcaggtggggcttttctctgtctgcctttcggt   <  1:4627357‑M1/49‑49 (MQ=255)

TATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  NC_000913/3720585‑3720682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`