mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,755,880 | 0 | G | A | 38.5% | 478.8 / inf | 557 | intergenic (+502/‑279) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase |
| * | NC_000913 | 3,946,246 | 0 | G | A | 31.8% | 361.8 / 196.5 | 258 | noncoding (2543/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.4% | 547.9 / 227.6 | 331 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 986,848 | 0 | A | G | 20.5% | 467.7 / 99.5 | 224 | F45F (TTT→TTC) | ompF | outer membrane porin 1a (Ia;b;F) |
| Marginal new junction evidence (lowest skew 10 of 504 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 683103 = | 156 (0.920) | 33 (0.190) | 28/194 | 11.4 | 17.5% | coding (291/1671 nt) | hscC | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| ? | NC_000913 | = 689045 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 16507 | NA (NA) | 32 (0.200) | 18/180 | 14.5 | NA | noncoding (1121/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16511 | NA (NA) | noncoding (1125/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 37 (0.230) | 15/182 | 16.2 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225889 = | NA (NA) | 40 (0.250) | 15/182 | 16.2 | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225907 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 36 (0.230) | 14/178 | 16.4 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2729630 = | NA (NA) | 43 (0.260) | 14/186 | 17.1 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 224057 = | NA (NA) | 33 (0.190) | 15/194 | 17.1 | NA | noncoding (287/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224084 = | NA (NA) | noncoding (314/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 683103 = | 156 (0.920) | 32 (0.190) | 14/192 | 17.5 | 17.2% | coding (291/1671 nt) | hscC | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| ? | NC_000913 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2066832 | 0 (0.000) | 30 (0.190) | 12/178 | 17.6 | 100% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 84 (0.520) | 12/184 | 18.1 | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||