New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3386201218 (1.090)24 (0.130) 18/176 13.8 11.3% intergenic (‑72/+20) yhcO/aaeB putative barnase inhibitor/p‑hydroxybenzoic acid efflux system component
?NC_000913 = 3386206 183 (1.030)intergenic (‑77/+15) yhcO/aaeB putative barnase inhibitor/p‑hydroxybenzoic acid efflux system component
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTCTCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3386092‑3386201
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgacgcCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTGATT  <  NC_000913/3386206‑3386108
                                                                                                                                                                                                                 
ccccCAATCTCACCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAA                                                                                                               <  1:1524332/96‑1
CTCTCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAA                                                                                                               >  2:2512212/1‑100
CTCTCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAA                                                                                                               >  1:2194994/1‑100
CTCTCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGGATAGCCAGGAAA                                                                                                               >  2:4689496/1‑100
  CTCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAA                                                                                                             >  1:3139429/1‑100
  CTCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTAACACCGTCAAGTTTCGAGGCGAGTTCTGCAGTGCATCGCTAAGTATAGCCATGAAAAA                                                                                                             >  2:4853447/1‑100
   TCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAA                                                                                                            >  2:4656640/1‑100
   TCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAA                                                                                                            <  1:2045203/100‑1
    CAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAAC                                                                                                           >  2:2852065/1‑100
     AATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACC                                                                                                          <  1:3406349/100‑1
      ATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCG                                                                                                         >  1:860804/1‑100
      ATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCG                                                                                                         >  2:2970835/1‑100
      ATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCG                                                                                                         >  1:1896098/1‑100
       TCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGA                                                                                                        >  2:2714011/1‑100
        caCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGAAAAAAAAAAAAAAAACCGAC                                                                                                       <  2:729242/98‑1
        CTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGAC                                                                                                       <  2:4568401/100‑1
        CTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGAC                                                                                                       <  2:1881742/100‑1
         cCATCAAAAGCAAAAGTATAAATATGCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACG                                                                                                      <  1:322579/99‑1
         TCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACG                                                                                                      <  2:1531585/100‑1
         TCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACG                                                                                                      >  1:1337086/1‑100
         TCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACG                                                                                                      >  1:2233578/1‑100
          CATCAAAATCAATGGTATAAATATTCAGCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCAGTGCATCGCTATGTATAGCTATGAAAAAACCGACGC                                                                                                     >  2:3059218/1‑100
          CATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGC                                                                                                     >  2:533215/1‑100
          CATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGC                                                                                                     <  1:126059/100‑1
          CATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGC                                                                                                     >  1:293670/1‑100
          CATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGC                                                                                                     >  2:704101/1‑100
           ATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCC                                                                                                    >  2:4646092/1‑100
             CAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCtt                                                                                                  >  2:1772273/1‑98
                AATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAG                                                                                               <  1:4721715/100‑1
                 ATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGC                                                                                              >  1:2005349/1‑100
                      AGGTATAACTACTCACCTGGCGCCACCGTCACGTGTCGCGGCGAGTCCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGG                                                                                         <  2:873833/100‑1
                       GGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGT                                                                                        <  1:2957704/100‑1
                        GTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTT                                                                                       <  2:3094335/100‑1
                        GTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTT                                                                                       <  2:2786437/100‑1
                        GTATAAAGATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCATCGGTT                                                                                       <  2:4192005/100‑1
                         TATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTT                                                                                      <  2:1980327/100‑1
                           TAAATTTTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTT                                                                                    <  2:4122983/100‑1
                            AAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTT                                                                                   <  2:1021752/100‑1
                               tagTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCAT                                                                                <  2:1526224/97‑1
                               TATTCATCTGTTGTCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAATCCGACGCCAAAAGCGTCGGTTTTTTCAT                                                                                <  2:3117443/100‑1
                               TATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCAT                                                                                <  1:2351420/100‑1
                               TATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCAAAAAGCGTCGGTTTTTTCAT                                                                                <  2:4106718/100‑1
                                ATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCATG                                                                               <  1:623801/100‑1
                                 TTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCATGG                                                                              <  2:16697/100‑1
                                 TTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCATGG                                                                              <  1:4068406/100‑1
                                  TCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCATGGC                                                                             <  1:819838/100‑1
                                           GCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAG                                                                    <  1:4472757/100‑1
                                                 GTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGC                                                              <  1:1699649/100‑1
                                                       TTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCA                                                        <  2:4384626/100‑1
                                                                                  CTAAGTATAGCCATGAAAAAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGC                             <  1:4765561/100‑1
                                                                                                   AAAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTAT            <  2:1661708/100‑1
                                                                                                   AAAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTAT            >  2:2781646/1‑100
                                                                                                   AAAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTAT            <  1:1767918/100‑1
                                                                                                   AAAACCGACGCCAAAAGCGTCGGCTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACCGATGAATATTTAT            >  2:1480108/1‑100
                                                                                                    AAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATn           <  1:4298072/100‑2
                                                                                                    AAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATA           >  2:2722625/1‑100
                                                                                                    AAACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATA           >  1:3004514/1‑100
                                                                                                     AACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATAC          >  2:919914/1‑100
                                                                                                      ACCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACC         >  1:434311/1‑100
                                                                                                      ACCGACACCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACC         >  1:78947/1‑100
                                                                                                       CCGACGCCAAAAGCGTCGGTTTTTTCATTTTTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGTCAACAGATGAATATTTATACCT        >  2:622681/1‑100
                                                                                                       CCGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCT        >  1:3251667/1‑100
                                                                                                        CGACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTT       <  1:1056328/100‑1
                                                                                                         GACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTT      <  1:483819/100‑1
                                                                                                         GACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTT      >  1:408100/1‑100
                                                                                                          tctCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTTACGGTGGCAACAGATGAATATTTATACCTTTG     <  2:4571350/97‑1
                                                                                                          ACGCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTG     <  1:3357955/100‑1
                                                                                                            GCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTGAT   <  1:3573708/100‑1
                                                                                                            GCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTGAT   <  1:1497936/100‑1
                                                                                                            GCCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTGAT   <  1:1207703/100‑1
                                                                                                             CCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTGATT  >  2:4126684/1‑100
                                                                                                             CCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTGATT  >  1:3514628/1‑100
                                                                                                             CCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTGATT  >  1:3186583/1‑100
                                                                                                             CCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACCCGCCGCGAAACGTGACGGTGGCAACAGATGAATATATATACCTTTGAga  >  1:4646261/1‑98
                                                                                                                                                                                                                 
CTCTCAATCTCATCAAAATCAAAGGTATAAATATTCATCTGTTGCCACCGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3386092‑3386201
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgacgcCAAAAGCGTCGGTTTTTTCATGGCTATACTTAGCGATGCACGGCAGAACTCGCCGCGAAACGTGACGGTGGCAACAGATGAATATTTATACCTTTGATT  <  NC_000913/3386206‑3386108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.