mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 34.1% | 104.0 / 69.7 | 90 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 21.9% | 157.6 / 38.1 | 84 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 113 (0.860) | 14 (0.150) | 4/406 | 10.5 | 18.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 46 (0.490) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 2319247 | 119 (0.900) | 6 (0.050) | 6/550 | 11.6 | 5.0% | coding (630/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | NC_000913 | = 2319264 | 113 (0.880) | coding (613/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
| * | ? | NC_000913 | 3945979 = | 138 (1.050) | 5 (0.040) | 5/552 | 12.3 | 3.6% | noncoding (2276/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4039784 = | NA (NA) | noncoding (2266/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3424526 | 147 (1.110) | 5 (0.040) | 5/552 | 12.3 | 3.4% | noncoding (2258/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4039802 = | NA (NA) | noncoding (2284/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3424526 | 147 (1.110) | 5 (0.040) | 5/552 | 12.3 | 3.5% | noncoding (2258/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3945986 = | 131 (1.020) | noncoding (2283/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 3424508 | 129 (0.980) | 5 (0.040) | 5/552 | 12.3 | 3.8% | noncoding (2276/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4039784 = | NA (NA) | noncoding (2266/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3424508 | 129 (0.980) | 5 (0.040) | 5/552 | 12.3 | 3.7% | noncoding (2276/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3424519 | 137 (1.070) | noncoding (2265/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 5 (0.040) | 5/552 | 12.3 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 9 (0.080) | 3/488 | 12.7 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 3945961 = | 136 (1.030) | 5 (0.040) | 4/552 | 12.9 | 3.6% | noncoding (2258/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4039802 = | NA (NA) | noncoding (2284/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||