| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 419210 = | 126 (0.940) | 22 (0.180) | 16/178 | 9.4 | 16.1% | intergenic (+26/‑381) | phoR/brnQ | sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val |
| ? | NC_000913 | 419234 = | 115 (0.940) | intergenic (+50/‑357) | phoR/brnQ | sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGAAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/419316‑419210‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcttatTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTA > NC_000913/419234‑419331 GTGAAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGAC < 2:1326293/99‑1GTGAAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGAC > 2:1210086/1‑99 TGAAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACT > 2:864244/1‑99 TGAAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACT > 1:512889/1‑99 TGAAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACT > 1:357068/1‑99 GAAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTG < 1:3399522/99‑1 AAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGG < 1:2641278/99‑1 AAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGC > 1:1332746/1‑99 AAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGC < 2:708479/99‑1 AAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGCTT < 2:1228465/99‑1 GACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGCTTAT < 1:885106/99‑1 TAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTG < 1:2756487/99‑1 ATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCA > 2:1251907/1‑99 AAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGC > 2:3165480/1‑99 GCAAAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATT > 2:990145/1‑99 CAAAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTA > 1:687861/1‑99 CAAAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGAATGATTA > 2:2171328/1‑99 AAAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGCTTTTACAACGAATGGTGATTTTTTGTTCGCATGATTAG > 2:1894183/1‑99 AAAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTATTCGCATGATTAG > 1:168351/1‑99 AAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGC > 1:1448334/1‑99 AAGAAAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGC > 2:3093334/1‑99 AGAAAATAAGCCAGCATCGACTGGCTTATGTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATGGGTGATTTTTTGGTCGCATGATTAGCC > 2:2589730/1‑99 AAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATG > 2:2492288/1‑99 AAATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATG > 2:2254600/1‑99 AATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGTATGATTAGCTATGT > 2:2998536/1‑99 AATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGAATGGTGATTTTTTGTTCGCATGATTAGCCATGT > 2:248449/1‑99 ATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTC > 2:3026251/1‑99 ATAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTC > 2:3344187/1‑99 TAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCT < 1:3218814/99‑1 TAAGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCT > 2:3346473/1‑99 AGCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTT > 1:1931024/1‑99 GCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCTTTTTTTTAGCCATGTCTTTT > 2:21704/1‑99 GCCAGCATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTT < 1:2519436/99‑1 CTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATA < 1:1322714/99‑1 CTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATA > 1:2245645/1‑99 TGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAG < 1:2625568/99‑1 GCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAAAGATTGGTGCTTTTTTGTTCGCTTGATTAGCCACGTCTTTTTCACGGAAAGAGTG > 1:1381451/1‑99 CTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGT < 1:1254063/99‑1 CTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGT > 1:2461331/1‑99 TTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTT > 2:1420802/1‑99 TATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTT < 1:1586905/99‑1 ATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTT < 2:2334350/99‑1 ATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTT < 2:531812/99‑1 TTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTA < 1:3015282/99‑1 GTGAAAAAGACATGGCTAATCATGCGAACAAAAAATCACCAATCGTTGTAAAATCTAACGCCCGTATTTTGACTGCAAAGAAAATAAGCCAGCATCGACTGGCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/419316‑419210‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcttatTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTA > NC_000913/419234‑419331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |