mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 417,533 | 0 | T | G | 54.5% | 3.5 / 17.7 | 22 | V131G (GTG→GGG) | phoB | response regulator in two‑component regulatory system with PhoR |
| * | NC_000913 | 433,649 | 0 | T | G | 46.9% | 3.8 / 10.1 | 33 | G65G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| * | NC_000913 | 2,483,268 | 0 | T | A | 36.4% | 53.1 / 11.1 | 34 | L24F (TTA→TTT) | emrK | multidrug resistance efflux pump membrane fusion protein |
| * | NC_000913 | 29,496 | 0 | T | A | 34.8% | 34.4 / 10.6 | 23 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,386,862 | 0 | G | A | 30.8% | 38.8 / 11.4 | 26 | intergenic (+31/‑72) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 4,604,350 | 0 | C | T | 29.6% | 103.9 / 14.7 | 54 | S64F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.9% | 102.6 / 54.5 | 76 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 753,125 | 0 | T | A | 28.6% | 74.7 / 10.6 | 35 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 1,335,727 | 0 | A | T | 25.4% | 160.0 / 12.4 | 64 | intergenic (+269/‑104) | yciX/acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| * | NC_000913 | 3,135,781 | 0 | G | T | 24.5% | 119.1 / 13.1 | 50 | R197R (CGC→CGA) | pitB | phosphate transporter |
| * | NC_000913 | 3,665,698 | 0 | T | C | 24.0% | 104.1 / 12.4 | 50 | D38G (GAT→GGT) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 4,366,232 | 0 | A | C | 20.9% | 156.8 / 11.1 | 67 | V181G (GTG→GGG) | dcuA | C4‑dicarboxylate antiporter |
| Marginal new junction evidence (lowest skew 10 of 171 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2180486 = | 47 (0.820) | 7 (0.130) | 7/296 | 4.0 | 12.4% | coding (392/1005 nt) | yegU | ADP‑ribosylglycohydrolase family protein |
| ? | NC_000913 | 2180910 = | 56 (1.060) | coding (816/1005 nt) | yegU | ADP‑ribosylglycohydrolase family protein | |||||
| * | ? | NC_000913 | = 359236 | 50 (0.870) | 8 (0.150) | 7/292 | 4.0 | 13.5% | coding (438/660 nt) | cynT | carbonic anhydrase |
| ? | NC_000913 | = 359364 | 57 (1.100) | coding (566/660 nt) | cynT | carbonic anhydrase | |||||
| * | ? | NC_000913 | = 2730267 | NA (NA) | 17 (0.310) | 7/310 | 4.2 | NA | noncoding (891/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2730343 | NA (NA) | noncoding (815/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 381525 = | NA (NA) | 10 (0.180) | 7/314 | 4.2 | NA | noncoding (266/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382181 = | NA (NA) | noncoding (922/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 224579 = | 9 (0.160) | 17 (0.310) | 7/310 | 4.2 | 66.2% | noncoding (809/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 2730261 | NA (NA) | noncoding (897/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 3129024 | 80 (1.400) | 8 (0.150) | 6/300 | 4.4 | 10.8% | coding (753/765 nt) | glcC | glycolate‑inducible glc operon transcriptional repressor; autorepressor |
| ? | NC_000913 | = 3129141 | 57 (1.070) | pseudogene (1003/1101 nt) | yghO | pseudogene, IS‑interrupted | |||||
| * | ? | NC_000913 | 1934404 = | 44 (0.770) | 6 (0.110) | 6/302 | 4.4 | 9.7% | coding (201/1812 nt) | edd | 6‑phosphogluconate dehydratase |
| ? | NC_000913 | 1934594 = | 70 (1.300) | coding (11/1812 nt) | edd | 6‑phosphogluconate dehydratase | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 6 (0.110) | 6/296 | 4.4 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 4038388 = | NA (NA) | 6 (0.110) | 6/308 | 4.5 | NA | noncoding (870/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4038885 = | NA (NA) | noncoding (1367/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 3955668 = | 35 (0.610) | 9 (0.170) | 6/306 | 4.5 | 26.0% | coding (338/1545 nt) | ilvA | l‑threonine dehydratase, biosynthetic; also known as threonine deaminase |
| ? | NC_000913 | 3955897 = | 18 (0.330) | coding (567/1545 nt) | ilvA | l‑threonine dehydratase, biosynthetic; also known as threonine deaminase | |||||