BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3635910 =	165 (1.050)	23 (0.170)	17/174	13.7	13.7%	intergenic (+17/+298)	yhiM/yhiN	acid resistance protein, inner membrane/putative oxidoreductase
*	?	NC_000913	3635946 =	144 (1.040)	23 (0.170)	17/174	13.7	13.7%	intergenic (+53/+262)	yhiM/yhiN	acid resistance protein, inner membrane/putative oxidoreductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

GTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGA  >  NC_000913/3635848‑3636045

gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTc                                                                                                    >  2:360992/1‑100 (MQ=255)

gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTc                                                                                                    >  1:787438/1‑100 (MQ=255)

 ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCt                                                                                                   <  2:3053294/100‑1 (MQ=255)

 ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCt                                                                                                   <  1:2094185/100‑1 (MQ=255)

 ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCt                                                                                                   <  1:3298350/100‑1 (MQ=255)

  tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                                                  >  2:2589803/1‑100 (MQ=255)

  tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                                                  >  1:2632452/1‑100 (MQ=255)

  tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                                                  >  1:4029857/1‑100 (MQ=255)

  tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                                                  >  1:2851650/1‑100 (MQ=255)

   ctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTa                                                                                                 >  2:2573477/1‑100 (MQ=255)

   ctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTa                                                                                                 >  1:3070252/1‑100 (MQ=255)

       aTCGTTTCAATATTAGAAGCGGGTTCTTCTAAAAAATAATCGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGca                                                                                             <  2:3825824/100‑1 (MQ=255)

         cGTTTCAATATTAGAAGCGCGGTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatc                                                                                           >  2:3359716/1‑100 (MQ=255)

          gTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatca                                                                                          >  2:2442096/1‑100 (MQ=255)

           tttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatcat                                                                                         <  1:2706064/100‑1 (MQ=255)

           tttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatcat                                                                                         <  2:3797485/100‑1 (MQ=255)

           cttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatcat                                                                                         <  2:111884/99‑1 (MQ=255)

            ttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATg                                                                                        >  2:78072/1‑100 (MQ=255)

              cAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaa                                                                                      >  1:2002998/1‑100 (MQ=255)

               aaTATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaaa                                                                                     >  1:913515/1‑100 (MQ=255)

               aaTATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaaa                                                                                     >  1:1022341/1‑100 (MQ=255)

                 tatTAGAAGTGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATa                                                                                   >  1:4074232/1‑100 (MQ=255)

                  atTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGCTTTTCTTAGGCATCATGAAATaa                                                                                  >  1:1191531/1‑100 (MQ=255)

                  atTAGAAGCGGGTTCTGCTAAAAAATAACTGCAACGTACCGTATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATaa                                                                                  <  2:1878956/100‑1 (MQ=255)

                    tAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACg                                                                                <  1:1968958/100‑1 (MQ=255)

                     aGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgc                                                                               >  1:3301559/1‑100 (MQ=255)

                      gAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgca                                                                              >  2:3411678/1‑100 (MQ=255)

                        aGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgcagc                                                                            >  2:902872/1‑100 (MQ=255)

                         gCGGGTTCTGCTAGAAAATAATTGCAACGTACCGGATAAAACCAGCGTTTACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgcagca                                                                           <  1:3677240/100‑1 (MQ=255)

                             gTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTaa                                                                       >  2:3032282/1‑100 (MQ=255)

                             gTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTaa                                                                       >  1:11364/1‑100 (MQ=255)

                              ttCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAAt                                                                      <  2:1529164/100‑1 (MQ=255)

                                  gCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCAt                                                                  <  1:2801428/100‑1 (MQ=255)

                                   cTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTTACCATTTGCGTAACGCTGGTTTTTTTTACGCATTATGTAATCCAGCAGCATTAATGCAtc                                                                 >  2:2352548/1‑99 (MQ=255)

                                   cTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATa                                                                 >  2:1207510/1‑100 (MQ=255)

                                   cTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATa                                                                 >  2:1061535/1‑100 (MQ=255)

                                   cTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTGTCTTAGGCATCATGAAATAACGCAGCATTAATGCATa                                                                 >  2:3639385/1‑100 (MQ=255)

                                     aaaaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGt                                                               <  2:2077474/100‑1 (MQ=255)

                                      aaaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTg                                                              >  2:416982/1‑100 (MQ=255)

                                      aaaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCAGAGTg                                                              <  2:18368/100‑1 (MQ=255)

                                        aaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGt                                                            >  2:2765649/1‑100 (MQ=255)

                                        aaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGt                                                            <  2:1736804/100‑1 (MQ=255)

                                         aataatTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGtt                                                           >  2:199687/1‑100 (MQ=255)

                                           taatTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTaa                                                         <  1:636920/100‑1 (MQ=255)

                                                 cAACGTACCGGATAAAGCCAGCGTTGACCATTTGCGTAACGCTGGGTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATaa                                                   >  2:1544785/1‑100 (MQ=255)

                                                 cAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATaa                                                   <  1:3121131/100‑1 (MQ=255)

                                                      tACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTTTTAGTCTTTTTGAAATAACGCAGCATTAATGCATAGTGTTTAAGTATAAAAAAc                                              >  2:1911680/1‑100 (MQ=255)

                                                      tACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAAc                                              <  1:4013844/100‑1 (MQ=255)

                                                       aCCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACa                                             <  2:728307/100‑1 (MQ=255)

                                                       aCCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACa                                             <  1:1673586/100‑1 (MQ=255)

                                                       aCCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACa                                             <  1:1868229/100‑1 (MQ=255)

                                                       aCCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACa                                             >  1:3346642/1‑100 (MQ=255)

                                                       aCCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACa                                             >  2:43733/1‑100 (MQ=255)

                                                        ccGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAg                                            <  2:1194098/100‑1 (MQ=255)

                                                        ccGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAg                                            <  1:1083482/100‑1 (MQ=255)

                                                           gATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCaa                                         >  2:3771510/1‑100 (MQ=255)

                                                            aTAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCaaa                                        >  1:543986/1‑100 (MQ=255)

                                                              aaaaCCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGt                                      >  2:1656919/1‑100 (MQ=255)

                                                               aaaCCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGtt                                     >  2:862326/1‑100 (MQ=255)

                                                                aaCCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATTCATAGTGGTTAAGTATAAAAAACAGCAAAGTTa                                    >  1:2016803/1‑100 (MQ=255)

                                                                 aCCAGCGTTGACCATTTGCGTAACGCTGGGTTGTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAc                                   >  2:1250568/1‑100 (MQ=255)

                                                                   cAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTg                                 <  1:3879547/100‑1 (MQ=255)

                                                                     gCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtt                               >  2:2939803/1‑100 (MQ=255)

                                                                       gTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttt                             <  1:541983/100‑1 (MQ=255)

                                                                        ttGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGttttt                            <  1:2181866/100‑1 (MQ=255)

                                                                        ttGACCATTAGCGAAATGCTGGGTTTTCTAAAGCATCATGATATACCACAGCCTTAGTGCATAGAGGAAAAAAATAAAAAACAGCAAAGTTACTGttttt                            <  2:3504662/100‑1 (MQ=255)

                                                                         tGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt                           <  1:870546/100‑1 (MQ=255)

                                                                         tGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt                           <  2:2808672/100‑1 (MQ=255)

                                                                         tGACCATTTGCGTAACGCTAGTTTTTTTTAGGCATCATGAAATACCGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt                           <  1:3019855/100‑1 (MQ=255)

                                                                         tGACCATCTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt                           <  1:3755207/100‑1 (MQ=255)

                                                                          gACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGTAACTTTGCTGtttttta                          <  2:2253901/100‑2 (MQ=38)

                                                                           aCCATTTGCGTAACGCTGGTTTTTCTTAGGTATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTc                         <  1:2962567/100‑1 (MQ=255)

                                                                           aCCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTc                         >  1:501995/1‑100 (MQ=255)

                                                                            ccATTTGCGTAACGCTGGTTTTTCTTAAGCATCTTGAAATAACGCAGCATTAATGCATAGTATTTAAGTATAAAAAAAAACAAAGTTACTGTTTTTTTCa                        >  2:2324705/1‑100 (MQ=255)

                                                                             cATTTGCGTAACACTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCaa                       <  2:658863/100‑1 (MQ=255)

                                                                              aTTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAAc                      <  1:121953/100‑1 (MQ=255)

                                                                               tttGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAAcc                     <  1:2863004/100‑1 (MQ=255)

                                                                               tttGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAAcc                     <  1:3484383/100‑1 (MQ=255)

                                                                                  ggtcaaCGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGt                  <  2:2875254/96‑1 (MQ=255)

                                                                                  gCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGt                  <  1:2808111/100‑1 (MQ=255)

                                                                                   cGTAACGCTGGTTTTTCTTAGGCATGAGGAAATACCGCATCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGtt                 >  2:3263720/1‑100 (MQ=255)

                                                                                    gTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTc                >  1:993607/1‑100 (MQ=255)

                                                                                     tAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCa               <  2:1000852/100‑1 (MQ=255)

                                                                                       aCGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCata             >  1:355935/1‑100 (MQ=255)

                                                                                        cGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCatat            >  1:811374/1‑100 (MQ=255)

                                                                                         gcaggTTTTTTTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGATAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATAtt           >  2:590208/4‑100 (MQ=255)

                                                                                         gCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATAtt           >  1:3383902/1‑100 (MQ=255)

                                                                                         gCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATAtt           >  1:3547768/1‑100 (MQ=255)

                                                                                           tGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATAtttn         <  1:3240533/100‑2 (MQ=255)

                                                                                           tGGTTTTTCTTAGGCATCATGAAATAAAGCAGCATTAATGCATAGTTGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTc         <  2:3694777/100‑1 (MQ=255)

                                                                                            gttttttCTTAGTCATCATGAAATAACTCAGCATTAATGCATAGTGTTTAAGTATAAAAAACAGCAAAGTTACTTTTTTTTTCAACCTGTTCATATTTCa        <  1:1316917/98‑1 (MQ=255)

                                                                                            ggTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCa        <  2:2833350/100‑1 (MQ=255)

                                                                                            ggTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCa        <  1:2525393/100‑1 (MQ=255)

                                                                                             gTTTTTCTTAGGTATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCAt       <  2:3990425/100‑1 (MQ=255)

                                                                                              tttttCTTAGGCATCATGAAAGAACGCAGCATTGATGCATATAGGTTAAGTATAAAAAACATCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATa      <  2:543733/100‑1 (MQ=255)

                                                                                               ttttCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATaa     >  1:1604981/1‑100 (MQ=255)

                                                                                                 ttCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAg   <  1:948941/100‑1 (MQ=255)

                                                                                                 ttCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAg   <  1:2889547/100‑1 (MQ=255)

                                                                                                  tCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGa  <  1:2306812/100‑1 (MQ=255)

                                                                                                  tCTTAGACATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCAtgatgc  >  1:2465297/1‑95 (MQ=255)

GTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGA  >  NC_000913/3635848‑3636045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.