New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4125740	61 (1.380)	4 (0.100)	4/286	4.2	9.1%	coding (1071/2199 nt)	priA	Primosome factor n' (replication factor Y)
	?	NC_000913	= 4126135	23 (0.550)					coding (676/2199 nt)	priA	Primosome factor n' (replication factor Y)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4125512‑4125740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgttACCGGTTCCGGTAAAACGGAGGTTTATCTCAGCGTACTGGAAAACGTGCTCGCTCAGGGCAAACAGGCGCTGGTGATGGTGCCGGAAATCGGCCTGACACCGCAAACTATCGCCCGTTTTCGTGAACGT  <  NC_000913/4126135‑4126007                                                                                                                                                                                                                                                                                                                                                                        TGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGGCAGGCGCAGCAGGCGGGATTTTTTCTGCCGGACGCTGCATAACGTTTCCAGCGCGGGCGT                                                                                                                                    >  1:523184/1‑228                                                                                                             CTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGG                                                                                                                                        >  1:362038/1‑116                                                                                                              TGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGG                                                                                                                                       <  2:361436/116‑1                                                                                                                          TCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTACCGGTTCCGGTAAAACGGAGGTTTATCTCAGCGTACTGGAAAACGTGCTCGCTCAGGGCAAACAGGCGCTGGTGATGGTGCCGGAAATCGGCCTGACACCGCAAACTATCGCCCGTTTT           >  2:523817/1‑228                                                                                                                                   TGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTACCGGTTCCGGTAAAACGGAGGTTTATCTCAGCGTACTGGAAAACGTGCTCGCTCAGGGCAAACAGGCGCTGGTGATGGTGCCGGAAATCGGCCTGACACCGCAAACTATCGCCCGTTTTCGTGAACGT  <  1:524664/228‑1                                                                                                                                                                                      CGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTACCGGTTCCGGTAAAACGGAGGTTTATCTCAGCGTACTGGAAAACGTGCTCGCTCAGGGCAAACAGGCGCTGGTGATGGTGCCGGAAATCGGCCTGACACCGCAAACTATCGCCCGTTTTCGTGA      >  1:323525/1‑173                                                                                                                                                                                       GGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTACCGGTTCCGGTAAAACGGAGGTTTATCTCAGCGTACTGGAAAACGTGCTCGCTCAGGGCAAACAGGCGCTGGTGATGGTGCCGGAAATCGGCCTGACACCGCAAACTATCGCCCGTTTTCGTGAA     <  2:323008/173‑1                                                                                                                                                                                                                                                                                                                                                                        TGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4125512‑4125740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgttACCGGTTCCGGTAAAACGGAGGTTTATCTCAGCGTACTGGAAAACGTGCTCGCTCAGGGCAAACAGGCGCTGGTGATGGTGCCGGAAATCGGCCTGACACCGCAAACTATCGCCCGTTTTCGTGAACGT  <  NC_000913/4126135‑4126007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.