New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 412574061 (1.380)4 (0.100) 4/286 4.2 9.1% coding (1071/2199 nt) priA Primosome factor n' (replication factor Y)
?NC_000913 = 4126135 23 (0.550)coding (676/2199 nt) priA Primosome factor n' (replication factor Y)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCACAATCGCCGCCTCACCATTTTTCGCTTTCAGCCACGCCGAAAGACGCTCGCTGTCGTTCAGGCCGGAATGCAGAACTTCCACGGGGGCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGTTCGGTATTCAATCGCAACCGCTCACCAGAAACGGCATAGTTCGTTCGCCAGTCGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGACCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAAT  >  NC_000913/4125909‑4126334
                                                                                                                                                                                                                                  |                                                                                                                                                                                                       
atcacgcccgccgcCTCACCATTTCTGGCTTGCACCCCCGCCAAAAGCCGCTGTCTGCCGTCCAGCCCGGAATGCAGACCTCCCCGGGGGGCATTAAACCGTTCACGAAACCGGGCGATAGTTTGGGGTGTCAGGCCGATTTCCGGCACCATCCCCAGCGCCTGTTTGCCCGGAGCGAGCACGTTTTCCAGTACGCTGAGAAAACCCTCCGTTTTCCCGGAACCGGt                                                                                                                                                                                                         <  2:373209/219‑1 (MQ=255)
                                cAGCCACGCCGAAAGACGCTCGCTGTCGTTCAGGCCGGAATGCAGAACTTCCACGGGGGCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATCAACCTCCGCTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGACAAAGCATc                                                                                                                                                                        >  2:351966/1‑228 (MQ=255)
                                  cccACCCCGAAAGCCTCTCGATGTCGTTCAGGCCGAAATGCAGAACTTCCCGGGGGACATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTg                                                                                                                                                                      <  2:237842/227‑1 (MQ=255)
                                    cACGCCGAAAGACGCTCGCTGCCGTTCAGGCCGGAATGCAAAACTTCCCGGGGGGCATTAAACCGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGcc                                                                                                                                                                    <  2:26582/228‑1 (MQ=255)
                                                   tcgctGTCGTTCAGGCCGGAATGCAGAACTTCCACGGGGGCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTgcg                                                                                                                                                     >  1:438731/1‑228 (MQ=255)
                                                            ttaaGGCCGAAATGCAGAACTTCCGAGGGGCCATTAAACCGTTCCCGAAAACGGGCGATAGTTGGCGGTGCCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAAcggcg                                                                                                                                            <  2:438016/225‑1 (MQ=255)
                                                                      aaggCAGAACTTCCGCGGGGGCATTAAAACGTTCACGAAACCGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGtt                                                                                                                                  <  2:599937/225‑1 (MQ=255)
                                                                                         ggCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGTACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCCGTTCCGTAATCCAATGCAAcc                                                                                                                >  1:554933/1‑227 (MQ=255)
                                                                                                                           tGCGGTGTCAGGCCGATTTCCGGCCCCATCACCAGCGCCTGTTGGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGTTCGGTATTCAATCGCAACCGCTCACCAGAAACGGCATAGTTCGTTCGCCa                                                                                 <  1:559777/224‑1 (MQ=255)
                                                                                                                           tGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGGCCGTTCGGTATTCCATCTCAACCGCTCACCAGACAAAGCATCGTGTGTTTGCCAGtgc                                                                             >  1:487228/1‑226 (MQ=255)
                                                                                                                                                               gcCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAGACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGTTCGGTATTCAATCGCAACCGCTCACCAGAAACGGCATAGTTCGTTCGCCAGTCGCTAAACTCTGGTGTTTCa                                                           <  1:562600/210‑1 (MQ=255)
                                                                                                                                                                              gcgagcACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGATATGAATTGCGCCAACGGCGGTGGCCTGTTCGGTATTCAATCGCAACCGCTCACCAGAAACGGCATAGTTCGTTCGCCAGTCGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGACCTTTTTTGCGTAgc                          <  1:352554/228‑1 (MQ=255)
                                                                                                                                                                                       ttttCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGGGGGCTGTTCGGGATTCAATCTCCACACCCCACCCGAAAAGGCCTCGTTCGTTCTCCAGTCGCTACACTCCGGGGTTTCACTTGCTAAATCACCCAGACCATATTTTCGTAGCGCCCGCAAc                 >  2:180834/1‑228 (MQ=255)
                                                                                                                                                                                                    tGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGGCCGTTCGGTATTTAATCGCAACCGCTCACCCGAAACgggcaaga                                                                                           >  2:257731/1‑135 (MQ=255)
                                                                                                                                                                                                     gagaTAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGTTCGGTATTCAATCGCAACCGCTCACCAGAAACGGCATAgtt                                                                                          <  1:258132/141‑1 (MQ=255)
                                                                                                                                                                                                      agaTAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAGAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGGCCGTTCGGGATTCAATCCCACACCCCCCCCCCAAACGGCATAAGTCGTTTCCCCGTCGCCAAACTCTGATGTTTCACTTTCTAAATCACACAGACCCTTTTTGTGTCACGCCTCCAACACGGCGTCCTTAAAt  >  2:638529/1‑228 (MQ=255)
                                                                                                                                                                                                                  gTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCgcgc                                                                                                                                                                >  1:526298/1‑58 (MQ=255)
                                                                                                                                                                                                                  gTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGGGGCCCGTTCGGGATTTAATCGCAACCCCCCACCCGAAAAGGCCTAGTTTGTTCGCCCGTCGGTAAAATCTTGGGTTTTACtt                                                        >  2:483405/1‑162 (MQ=255)
                                                                                                                                                                                                                   ttttACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCt                                                                                                                                                               <  2:525447/58‑1 (MQ=255)
                                                                                                                                                                                                                   ttttACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGTTCGGTATTCAATCGCAACCGCTCACCAGAAACGGCATAGTTCGTTCGCCAGTCGCTAAACTCTGGTGTTTCACTTg                                                       <  1:484199/162‑1 (MQ=255)
                                                                                                                                                                                                                       aCCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGTTCGGGATTCAATCGCAACCGCCCACCAGAAACGGCATAGTTCGGTCGCCAGTCGCTAAAct                                                                      >  1:72437/1‑143 (MQ=255)
                                                                                                                                                                                                                        ccGGACCCGTTACCGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGTTCGGTATTCAATCGCAACCGCTCACCAGAAACGGCATAGTTCGTTCGCCAGTCGCTAAActc                                                                     <  2:72333/143‑1 (MQ=255)
                                                                                                                                                                                                                                 gTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTg                                                                                                                                                       >  2:177662/1‑52 (MQ=255)
                                                                                                                                                                                                                                  tAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTgc                                                                                                                                                      <  1:177933/52‑1 (MQ=255)
                                                                                                                                                                                                                                  |                                                                                                                                                                                                       
ATCACAATCGCCGCCTCACCATTTTTCGCTTTCAGCCACGCCGAAAGACGCTCGCTGTCGTTCAGGCCGGAATGCAGAACTTCCACGGGGGCATTAAAACGTTCACGAAAACGGGCGATAGTTTGCGGTGTCAGGCCGATTTCCGGCACCATCACCAGCGCCTGTTTGCCCTGAGCGAGCACGTTTTCCAGTACGCTGAGATAAACCTCCGTTTTACCGGAACCGGTAACGCCCGCCAGCAGCCAGGCAGAAAAAGTATCTGCCGCGCTATGAATTGCGCCAACGGCGGTGGCCTGTTCGGTATTCAATCGCAACCGCTCACCAGAAACGGCATAGTTCGTTCGCCAGTCGCTAAACTCTGGTGTTTCACTTGCTAAATCACACAGACCTTTTTTGCGTAGCGCCTGCAACGCGGCATCATTAAAT  >  NC_000913/4125909‑4126334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.