New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 998212	37 (0.820)	3 (0.070)	3/264	NT	7.8%	coding (345/540 nt)	elfA	laminin‑binding fimbrin subunit
	?	NC_000913	= 998309	36 (0.840)					coding (442/540 nt)	elfA	laminin‑binding fimbrin subunit

TGGTCAGGTTTCTGGCGTGCAAATTGATGTGCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACT  >  NC_000913/998068‑998359                                                                                                                                                 |                                                                                                                                                    tGGTCAGGTTTCTGGCGTGCAAATTGATGTGCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGAtgctg                                                                                                                                                 <  2:798288/149‑1 (MQ=255)        gTTTCTGGCGTGCAAATTGATGTGCCAATTGAATTAAAAGATTGTGATACTACAGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTCCAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACaaa                                                                                                                                          >  1:454565/1‑149 (MQ=255)                     aaaTTGATGTGCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCaa                                                                                                                             >  1:663752/1‑149 (MQ=255)                       aTTGATGTGCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAAt                                                                                                                           >  1:150981/1‑149 (MQ=255)                        ttGATGTGCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATg                                                                                                                          >  1:381843/1‑149 (MQ=255)                            tgtgCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATTGTGCGTCAAACGGGGCCCTGCAAATGtata                                                                                                                      >  2:167249/1‑149 (MQ=255)                            tgtgCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGtata                                                                                                                      >  2:225817/1‑149 (MQ=255)                             gtgCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATctccatcctgcaacaaaatgttcccggtttct                                                                                                                     >  2:30752‑M1/1‑117 (MQ=255)                              tgCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCGACAAACGTGGCCCTGCAAATGTATatg                                                                                                                    >  1:267864/1‑149 (MQ=255)                                          tAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACa                                                                                                        >  2:347803/1‑149 (MQ=255)                                            aaaGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAAc                                                                                                      >  1:741416/1‑149 (MQ=255)                                              aGATTGTGATACTACCGTAACAAAAATTCCAACGTTCACCTTTAATGGCACTGCAGATAGTACACAGATTACAGCGTTTCCTTGCTAAGCGACATCTGCCGCTGCTACAAACGTGGCCCCACAAGTGTAAATAAATGAAGGTACaaagt                                                                                                    >  2:320185/1‑146 (MQ=255)                                                         ctacCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCa                                                                                         <  1:458607/149‑1 (MQ=255)                                                          tacCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAg                                                                                        >  1:331406/1‑149 (MQ=255)                                                               tAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCCAATGTATATGAATGATGGTACAACGGCCATCACGCCAGAcaca                                                                                   >  2:136575/1‑149 (MQ=255)                                                               tAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGAcaca                                                                                   >  2:705048/1‑149 (MQ=255)                                                                 aCAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGa                                                                                 <  1:374138/149‑1 (MQ=255)                                                                    aaaaaTGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCCGATGCTGCTACAAACGTGGCCCTGCAAAGGTATATGAATGATGGTACAACGGCCCTGAAGCCAGACAAAGAAAc                                                                              >  1:344181/1‑149 (MQ=255)                                                                     aaaaTGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAAcc                                                                             >  2:246682/1‑149 (MQ=255)                                                                     aaaaTGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAAcc                                                                             >  1:802491/1‑149 (MQ=255)                                                                      aaaTGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCg                                                                            <  1:85080/149‑1 (MQ=255)                                                                       aaTGCAGCGTTCACCTTTAATGGCACTGCGTATACTACGCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCgg                                                                           <  2:92903/149‑1 (MQ=255)                                                                                    ccTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTttgttg                                                              <  2:381843/149‑1 (MQ=255)                                                                                     cTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTGGTTGc                                                             >  2:549390/1‑149 (MQ=255)                                                                                      tttAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTAATGGATAGGTGGCGCAGCAAATGTATATGCATGATGGTACAACGGCCATCACGCCAGACACAGAAAACGGGAACAGTTTGTTGcc                                                            >  1:351208/1‑148 (MQ=255)                                                                                          aTGGCACCGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGAt                                                        <  1:286221/149‑1 (MQ=255)                                                                                                cTGCGGATACTTCTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACGCAGAAACCGGGAACATTTTGTTGCAGGATGGAGat                                                  >  2:498539‑M2/1‑147 (MQ=255)                                                                                                     gATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGAc                                             >  1:276734/1‑149 (MQ=255)                                                                                                          tactCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATctccatcctgcaacaaaatgttcccggtttctgtgtctggcgtgatggccgttgtaccatcattcatatacatttgcagggccacgtttgtagcagcatcagatgaggc                                        <  1:30752‑M1/149‑110 (MQ=255)                                                                                                           actCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGAc                                       >  1:362584/1‑149 (MQ=255)                                                                                                             tCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGCCGTTGACtt                                     >  2:138997/1‑149 (MQ=255)                                                                                                                   tACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGCCACAGAAACCGGGAACATTTTGTTGCAGCAT‑‑‑agatgaggcctggttagcaaacgc                             <  1:363585‑M2/149‑25 (MQ=255)                                                                                                                      aGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTg                            >  2:492403/1‑149 (MQ=255)                                                                                                                       gCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGCCGTTGACTTTTAAAGTTGa                           <  1:511875/149‑1 (MQ=255)                                                                                                                       gCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGa                           <  1:657642/149‑1 (MQ=255)                                                                                                                       gCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGa                           <  2:454565/149‑1 (MQ=255)                                                                                                                       gCGTTTGCTAACCAGGCCTCATCTG‑tgctgcaacaaaatgttcccggtttctgtggctggcgtgatggccgttgtaccatcattcatatacatttgcagggccacgtttgtagcagcatcagatgaggcctggttagcaaacgctgta                           <  1:363585‑M1/149‑124 (MQ=255)                                                                                                                        cGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGAt                          <  2:267864/149‑1 (MQ=255)                                                                                                                            tGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATtata                      <  1:684707/149‑1 (MQ=255)                                                                                                                              cTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCGAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATc                    <  2:639364/149‑1 (MQ=255)                                                                                                                                aaCCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGc                  >  2:349612/1‑149 (MQ=255)                                                                                                                                 aCCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTCAAGTTGATTATATCGCt                 >  1:30580/1‑149 (MQ=255)                                                                                                                                      gCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGatcagatgaggcctggttagcaaacgctgtaatctgagta            <  1:30752‑M2/149‑41 (MQ=255)                                                                                                                                           aTCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCCCTACGGGGAAAg       >  2:411226/1‑149 (MQ=255)                                                                                                                                                aTctccatcctgcaacaaaatgttcccggtttctgcgtctggcgtgatggccgttgtaccatcattcatatacatttgcagggccacgtttgtagcagcatcagatgaggcctggttagcaaacgctgtaatctgagaagtatccgcag  >  2:498539‑M1/1‑2 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TGGTCAGGTTTCTGGCGTGCAAATTGATGTGCCAATTGAATTAAAAGATTGTGATACTACCGTAACAAAAAATGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACT  >  NC_000913/998068‑998359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.