New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 99821237 (0.820)3 (0.070) 3/264 NT 7.8% coding (345/540 nt) elfA laminin‑binding fimbrin subunit
?NC_000913 = 998309 36 (0.840)coding (442/540 nt) elfA laminin‑binding fimbrin subunit

CTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGTGTTCTGGAG  >  NC_000913/998163‑998457
                                                                                                                                                  |                                                                                                                                                    
cTGCGGATACTTCTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACGCAGAAACCGGGAACATTTTGTTGCAGGATGGAGat                                                                                                                                                    >  2:498539‑M2/1‑147 (MQ=255)
     gATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGAc                                                                                                                                               >  1:276734/1‑149 (MQ=255)
           actCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGAc                                                                                                                                         >  1:362584/1‑149 (MQ=255)
             tCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGCCGTTGACtt                                                                                                                                       >  2:138997/1‑149 (MQ=255)
                   tACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGCCACAGAAACCGGGAACATTTTGTTGCAGCAT‑‑‑agatgaggcctggttagcaaacgc                                                                                                                               <  1:363585‑M2/149‑25 (MQ=255)
                      aGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTg                                                                                                                              >  2:492403/1‑149 (MQ=255)
                       gCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGCCGTTGACTTTTAAAGTTGa                                                                                                                             <  1:511875/149‑1 (MQ=255)
                       gCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGa                                                                                                                             <  1:657642/149‑1 (MQ=255)
                       gCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGa                                                                                                                             <  2:454565/149‑1 (MQ=255)
                        cGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGAt                                                                                                                            <  2:267864/149‑1 (MQ=255)
                            tGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATtata                                                                                                                        <  1:684707/149‑1 (MQ=255)
                              cTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCGAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATc                                                                                                                      <  2:639364/149‑1 (MQ=255)
                                aaCCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGc                                                                                                                    >  2:349612/1‑149 (MQ=255)
                                 aCCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTCAAGTTGATTATATCGCt                                                                                                                   >  1:30580/1‑149 (MQ=255)
                                      gCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGatcagatgaggcctggttagcaaacgctgtaatctgagta                                                                                                              <  1:30752‑M2/149‑41 (MQ=255)
                                           aTCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCCCTACGGGGAAAg                                                                                                         >  2:411226/1‑149 (MQ=255)
                                                              gTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGaa                                                                                      >  1:395784/1‑149 (MQ=255)
                                                                      gCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTaa                                                                              >  1:700172/1‑149 (MQ=255)
                                                                       cAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAAc                                                                             >  2:31440/1‑149 (MQ=255)
                                                                           tGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTTAATGCGGTAACataa                                                                         >  2:182400/1‑146 (MQ=255)
                                                                              atatGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAATATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTc                                                                      <  2:344181/149‑1 (MQ=255)
                                                                                atgaatgaTGGTACAACGGCCAGCACGCCAGACACAGAAACCGGGAACATTTTGGTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCa                                                                    <  2:150981/149‑1 (MQ=255)
                                                                                       atgGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAAc                                                             >  1:126152/1‑149 (MQ=255)
                                                                                         gggaCAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACta                                                           <  1:246682/146‑1 (MQ=255)
                                                                                         ggTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACta                                                           <  2:802491/149‑1 (MQ=255)
                                                                                          gTACAACGGCCATCACGCCAGACACAGCAAGGGGTTACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTTACtat                                                          >  2:773066/1‑149 (MQ=255)
                                                                                          gTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAGTTTCCATATTAACtat                                                          >  1:761188/1‑149 (MQ=255)
                                                                                            aCAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATAATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACtatta                                                        <  1:492403/149‑1 (MQ=255)
                                                                                               aCGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTAttatta                                                     >  1:209991/1‑149 (MQ=255)
                                                                                                    cATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGACTGCGGTAACAAATTTCCATATTAACTATTATTAATAGa                                                >  1:78890/1‑149 (MQ=255)
                                                                                                    cATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTGTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATGAACTATTATTAATAGa                                                >  1:136905/1‑149 (MQ=255)
                                                                                                              gACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAAt                                      >  1:473532/1‑149 (MQ=255)
                                                                                                                   aGAAACCGGGAACATTTTGTTGCAGGATGGAGatcagatgaggcctggttagcaaacgctgtaatctgagtagtatccgcagtgccattaaaggtgaacgttgcattttttgttacggtagtatcacaatcttttaattcaattggcac                                 >  2:30752‑M2/1‑32 (MQ=255)
                                                                                                                       aCCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTttatt                             <  1:549390/149‑1 (MQ=255)
                                                                                                                        ccGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTttatta                            <  1:225817/149‑1 (MQ=255)
                                                                                                                        ccGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTttatta                            <  1:167249/149‑1 (MQ=255)
                                                                                                                          gggAACATTTTGTTGCAGGATTGAGATCAGACGTTGACTTTTAAACTTGATTACAGCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGTTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTattaat                          <  1:705048/149‑1 (MQ=255)
                                                                                                                          gggAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTattaat                          <  1:136575/149‑1 (MQ=255)
                                                                                                                            gAACATTTTGTTGAAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTCACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTattaatta                        >  1:547023/1‑149 (MQ=255)
                                                                                                                                aTTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTAc                    >  2:320525/1‑149 (MQ=255)
                                                                                                                                 ttttGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTAcc                   >  1:694401/1‑149 (MQ=255)
                                                                                                                                                  gaTCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGTGTTCTGGAg  <  1:788738/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGTGTTCTGGAG  >  NC_000913/998163‑998457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.