New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4136023 =	107 (1.000)	5 (0.050)	4/278	16.5	4.6%	intergenic (+9/‑84)	katG/yijE	catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein
	?	NC_000913	4136057 =	107 (1.060)					intergenic (+43/‑50)	katG/yijE	catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAACTCCAGATAAGTGTGAGCACAACCAGGCCACTGATTGCCAGTGGGTTGCTCTTTCCTGCGGCAGACATGAGAGATCCAGTGTGTAGTTTTCGTTCGCCCACTATACGCTGGTAAAGAACGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4136178‑4136023 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgaacgTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGCAAGTCAC  >  NC_000913/4136057‑4136204                                                                                                                                                                                                                                                                                                                  ATAACTCCAGATAAGTGTGAGCACAACCAGGCCACTGATTGCCAGTGGGTTGCTCTTTCCTGCGGCAGACATGAGAGATCCAGTGTGTAGTTTTCGTTCGCCCACTATACGCTGGTAAAGAACGTTCAGCGACTGCCAGCAAGCAGCCG                                                                                                                                                             <  1:627276/149‑1    ACTCCAGATAAGTGTGAGCACAACCAGGCCACTGATTGCCAGTGGGTTGCTCTTTCCTGCGGCAGACATGAGAGATCCAGTGTGTAGTTTTCGTTCGCCCACTATACGCTGGTAAAGAACGTTAAGCGACTGCCAGCAAGCAGCCGCTG                                                                                                                                                          >  1:1249362/1‑149     CTCCAGATAAGTGTGAGCACAACCAGGCCACTGATTGCAAGTGGGTTGCTCTTTCCTGCGGCAGACATGCGAGATCCCGTGGGTAGTTTTCGTTCGCCCACCATACGCTGGTCAAGAACGTTCAGCGGCTGCCAGGCAGGAGCCGCgcg                                                                                                                                                         >  1:455757/1‑146        CAGATAAGTGTGAGCACAACCAGGCCACTGATTGCCAGTGGGTTGCTCTTTCCTGCGGCAGCCATGCGAGATCCAGTGTGTAGTTTTCGTTAGACCACTATACGCTGGCAAAGAACGTTCAGCGACTGCCAGCAAGCAGCCGTGGAACG                                                                                                                                                      <  2:1490272/149‑1        CAGATAAGTGTGAGCACAACCAGGCCACTGATTGCCAGTGGGTTGCTCTTTCCTGCGGCAGACATGAGAGATCCAGTGTGTAGTTTTCGTTCGCCCACTATACGCTGGTAAAGAACGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACG                                                                                                                                                      <  1:509233/149‑1        CAGATAAGTGTGAGCACAACCAGGCCACTGATTGCCAGTGGGTTGCTCTTTCCTGCGGCAGACATGAGAGATCCAGTGTGTAGTGTTCGTTCGCCCACTATACGCTGGTAAAGAGTGGCCAGCGACTGCCAGCAACCAGCCGCTGAACG                                                                                                                                                      >  2:136511/1‑149                                                                  CAGACATGAGAGATCCAGTGTGTAGTTTTCGTTCGCCCACTATACGCTGGTAAAGAACGTTCAGCGACTGCCAGTAAGCAGCCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGC                                                                                            >  2:229349/1‑149                                                                                                  TCGCCCACTATACGCTGGTAAAGAACGTTCAGCGACTGCCAGTAAGCAGCCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTG                                                            <  1:229349/149‑1                                                                                                                             TTCAGCGACTGCCAGCAAGCAGCCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCACTCAGTGACGTGTATTTGCTCACAATTAgatggg                                 >  1:406726/1‑143                                                                                                                             TTCAGCGACTGCCAGCAAGCAGCCGCTGAACGTTCTTTACCAGCGCATAGTGGGCGAAAGCAAACTACACACTGGATCTCTAATGCCTGCCGCCGGAAAGAGCAACCCACGGGCAATCAGTGGCCTGGTTGTGCTCACACTTCTCTGGA                                 >  2:602979/1‑149                                                                                                                                 GCGACTGCCAGCAAGCAGCCGCTGAACGTTCTAAACCTGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTA                             >  2:1266285/1‑149                                                                                                                                                     GCTGAACGTTCTTTACCGGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGGGGCCGGGTTGTGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGC         >  1:264284/1‑149                                                                                                                                                     GCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCCGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGC         >  2:852892/1‑149                                                                                                                                                      CTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGCA        >  1:707469/1‑149                                                                                                                                                       tggACGGTCTTTACTAGCGGATAGTCGGCGAACTAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCTACTGGCAATCAGTCGCCTGGTTGTGCTCACACTTATCCGGAGTTATAGCTGGATTTTCATGAAGCAA       <  1:1087839/146‑1                                                                                                                                                       TGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCGGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACCTATCTGGAGTTATAGCTGGATTTTCATGAAGCAA       <  1:1461665/149‑1                                                                                                                                                        GAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTATGGATGGTTGTTGATGACGCAAG      >  2:280442/1‑149                                                                                                                                                        GAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGCAAG      >  2:1587307/1‑149                                                                                                                                                         AACGTTCTTTACCAGCGTATAGTGGGCGAACGAAACCTACACACTGGATCACTCATGTCTGCCGCAGGCAAGAGCAACCCACTGGCCATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGCAAGT     >  2:208422/1‑149                                                                                                                                                         AACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTCATAGCTGGATTTTCATGAAGCAAGT     >  2:229131/1‑149                                                                                                                                                          ACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGCGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGCAAGTC    >  1:1437980/1‑149                                                                                                                                                            GTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGCAAGTCAC  >  1:1665255/1‑149                                                                                                                                                                                                                                                                                                                  ATAACTCCAGATAAGTGTGAGCACAACCAGGCCACTGATTGCCAGTGGGTTGCTCTTTCCTGCGGCAGACATGAGAGATCCAGTGTGTAGTTTTCGTTCGCCCACTATACGCTGGTAAAGAACGTTCAGCGACTGCCAGCAAGCAGCCGCTGAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4136178‑4136023 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgaacgTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCCACTGGCAATCAGTGGCCTGGTTGTGCTCACACTTATCTGGAGTTATAGCTGGATTTTCATGAAGCAAGTCAC  >  NC_000913/4136057‑4136204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.