New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	481050 =	31 (0.710)	4 (0.090)	4/276	NT	11.4%	intergenic (‑342/+204)	tomB/acrB	Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
	?	NC_000913	1467910 =	NA (NA)					intergenic (+6/+11)	ydbA/insD1	pseudogene, autotransporter homolog; interrupted by IS2 and IS30/IS2 transposase TnpB

CGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTA  >  NC_000913/480902‑481186                                                                                                                                                     |                                                                                                                                         caaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaa                                                                                                                                          >  1:318545‑M1/149‑149 (MQ=255) caaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaa                                                                                                                                          <  1:294566‑M1/1‑1 (MQ=255) caaagaaccgtgcagaggcgttggaccatgataacgaatggcatctgcatagtgcgctgggttatcgctcgccacggtaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaa                                                                                                                                          >  1:300515‑M1/149‑149 (MQ=255)                   tttGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATgg                                                                                                                        >  1:16636/1‑149 (MQ=255)                                 tCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTAt                                                                                                          >  1:757429/1‑149 (MQ=255)                                 tCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTAt                                                                                                          >  1:61979/1‑149 (MQ=255)                                   aTAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACCACTACCAGGATTGCTCTGAATAGGACGTAATAACCGAGGAATGAATAAAGAATGACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTa                                                                                                        >  2:327076/1‑149 (MQ=255)                                    tAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAg                                                                                                       >  2:144929/1‑149 (MQ=255)                                       cATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAgcgc                                                                                                    <  1:203907/149‑1 (MQ=255)                                           tccggATTATCGCCACATGAAATTGGTGACACTAATACCAGGATTGATCTGAAGATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACt                                                                                                <  1:412477/146‑1 (MQ=255)                                           tCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACt                                                                                                <  1:559707/149‑1 (MQ=255)                                           gcAGGATTATCGCCTGATGAAATTGGTGACACTAATTCCAGGCTTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCATATAATTAAGACTAGCCTCTAAATGATTATGGATTATTAAATTTATTAGCGCTACt                                                                                                <  1:552157/148‑1 (MQ=255)                                                   aTCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATaa                                                                                        <  1:88784/149‑1 (MQ=255)                                                     cGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAAt                                                                                      <  1:580813/149‑1 (MQ=255)                                                     cGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAAt                                                                                      <  1:536242/149‑1 (MQ=255)                                                        gaGATGAAATTGGAGACATCAATACCAGGATGGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGAAAACAACTAAGAATAGCCTCTAAATGATTATGGATTATGAAATCTATTAGCGCTACTTAAGATAAATtaa                                                                                   <  2:514702/148‑1 (MQ=255)                                                        cAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATtaa                                                                                   <  2:495198/149‑1 (MQ=255)                                                            ataaaTTGGTGACACTAATACCAGGATTGCTCTGAATAGGCCGTAATAACCGAGGAATGAGTAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATtaactaa                                                                               <  2:738894/147‑1 (MQ=255)                                                                  tagatacacTAATACCAGCACTCCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCa                                                                         <  1:34806/144‑1 (MQ=255)                                                                         acTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTAtttt                                                                  <  1:247278/149‑1 (MQ=255)                                                                                  aGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAAtt                                                         <  1:144929/149‑1 (MQ=255)                                                                                      gcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTAt                                                     >  1:204888‑M1/64‑149 (MQ=255)                                                                                         ctctGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCg                                                  >  1:341191/1‑149 (MQ=255)                                                                                          tctGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAACTGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATAAGTATTGTTTATGAATTTTATCCGt                                                 >  2:535448/1‑149 (MQ=255)                                                                                             cgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGt                                              <  2:605849‑M1/93‑1 (MQ=255)                                                                                                   gACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATAc                                        <  1:330467/149‑1 (MQ=255)                                                                                                    aCGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACt                                       >  1:721731/1‑149 (MQ=255)                                                                                                    aCGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACt                                       >  1:305544/1‑149 (MQ=255)                                                                                                       taataaCCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGt                                    >  2:559468/1‑149 (MQ=255)                                                                                                             taagtgataacagatgtctggaaatataggggcaaatccaAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGt                              >  1:73349‑M1/41‑149 (MQ=255)                                                                                                               gAGGAATGAATAAAGAATTACCGCACATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTAAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTAt                            <  1:480540/149‑1 (MQ=255)                                                                                                               gAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTAt                            >  2:242371/1‑149 (MQ=255)                                                                                                               gAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGACTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATAGTGGTTTTCGTAt                            <  1:563828/149‑1 (MQ=255)                                                                                                                         aaaaGAATTACCGCAAATAATTAAGAATAGCATCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGa                  >  2:573257/2‑149 (MQ=255)                                                                                                                              ctggaaatataggggcaaatccaAGCCTCTAAATGATTATGGATTATTAACTCTGTAAGCGCTACGTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGCGTtgg             <  1:415662‑M1/126‑1 (MQ=255)                                                                                                                                         ataatTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGTATTTTTTTCGTGGTTAATACTTGTTTTCGTATGGGATCCTGAGTTGGGGGTTCAATTa  >  2:585761/1‑149 (MQ=255)                                                                                                                                         ataatTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTa  >  1:216935/1‑149 (MQ=255)                                                                                                                                         ataatTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGGTAATACTGGTTTTCGTATCAGATCCTGAGTTGGGGGTTCGATTa  >  2:545563/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                         CGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTA  >  NC_000913/480902‑481186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.