New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	481050 =	31 (0.710)	4 (0.090)	4/276	NT	11.4%	intergenic (‑342/+204)	tomB/acrB	Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
	?	NC_000913	1467910 =	NA (NA)					intergenic (+6/+11)	ydbA/insD1	pseudogene, autotransporter homolog; interrupted by IS2 and IS30/IS2 transposase TnpB

AATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCT  >  NC_000913/1467762‑1468054                                                                                                                                                     |                                                                                                                                                  aaTGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCt                                                                                                                                                   <  1:778138/149‑1 (MQ=255)     gagaTACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGGTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATGGACAGTTTTGAACATCATGGGACAAGAACCCTGGAt                                                                                                                                               >  2:110152/1‑149 (MQ=255)                          aaTTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACa                                                                                                                          >  1:671055/1‑149 (MQ=255)                             tCCCTCGGGGGTTTGCCGGGTTTATTCGGGTACAGGATACCGGTTTCCCAGAGATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCt                                                                                                                       <  1:372358/149‑1 (MQ=255)                                    ggagTTAGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAAAAATGCGGGAGATTTTCAGTTTTGACTATCATGGGACGAGAACCCTGGACTTGCCCATATATTTCCAGGCATCTGGT‑TTCa                                                                                                               >  2:86479/4‑149 (MQ=255)                                               gggTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACCGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGCCCTCTGTT‑ATCACTTAACCCAtt                                                                                                    >  1:395994/1‑149 (MQ=255)                                               gggTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCAAGCCATCTGTT‑CTCACGTAACCCAtt                                                                                                    >  1:102125/1‑149 (MQ=255)                                                     ttCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGc                                                                                              >  1:724648/1‑149 (MQ=255)                                                                           gCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGt                                                                        >  2:650361/1‑149 (MQ=255)                                                                             tGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTgg                                                                      <  2:671055/149‑1 (MQ=255)                                                                                agaTTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATCTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcca                                                                   >  2:614195/3‑147 (MQ=255)                                                                                aaaTTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcga                                                                   >  2:725783/1‑149 (MQ=255)                                                                                aaaTTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcga                                                                   >  1:777860/1‑149 (MQ=255)                                                                                aaaTTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcga                                                                   >  1:727954/1‑149 (MQ=255)                                                                                 aaTTGGGAGTGACGCGACGCAAAGAATGCAGGAGATCGTCAGTTTTGAACATCATGGGACAAGATCCCTGGATTTGCCCCTATATGTCCAGACATCTGTT‑ATCACTTATCCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcgag                                                                  <  1:747997/149‑1 (MQ=18)                                                                                   ttGGCAGTGGCGCTACGCTAAAAATGCAGGATATTGAAAGTTTTGAACATCATGGGACAAGAACCCTGGAAATGCCCCTCTCTTTCCAGACATCCGTT‑ATCTCTTAACACATTACAAACCCGGTGCCACCGATAGTCCCTTGgcgagcg                                                                >  2:45093/1‑149 (MQ=255)                                                                                   ttGGCAGTGGCGCCACGCTAACAATACCGGACAGCGACAGGCTTCAACACCATGGGACAAGAACCCGGGATTTGCCCCTATATTTCCAGCCATCTGTT‑AACACTGACACCATTACAAGCCCGCTCCCGCAGATATTCCCGTggcgggcg                                                                >  2:25097/1‑149 (MQ=17)                                                                                       cAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATCTTCCCGTGGCGAGCGATaa                                                            >  1:67189/1‑149 (MQ=255)                                                                                         gTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAAcc                                                          <  1:46511/149‑1 (MQ=255)                                                                                         gTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAAcc                                                          <  1:388469/149‑1 (MQ=255)                                                                                                                      gACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTtat                             >  1:620668/1‑149 (MQ=255)                                                                                                                      gACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTtat                             >  2:102951/1‑149 (MQ=255)                                                                                                                        cAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATaa                           <  2:283712/149‑1 (MQ=255)                                                                                                                         aGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCGTATATTTCCAGACATCTGTT‑ATAACTTAACCGATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAAACCAGCGCACTATTCGGATGCCATTCTGTATAAt                          >  1:332050/1‑149 (MQ=17)                                                                                                                         aGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTGAACGCTT‑ACCCATTTCTTTGCTGTTGCCGCAGATATTCCCGTGACGACCCATCACCCAGCGCCCTACGCGCATGCCATCCGTTATAAt                          >  1:185716/1‑149 (MQ=12)                                                                                                                         aGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAAt                          <  1:365643/149‑1 (MQ=255)                                                                                                                           ttttGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAAGCCAGCGCACTAGGCGGATGCCATTGGTTATAAtcc                        >  1:225551/1‑147 (MQ=255)                                                                                                                           ttttGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGc                        >  1:80998/1‑149 (MQ=255)                                                                                                                            tttCAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCt                       <  2:139308/149‑1 (MQ=255)                                                                                                                                aaCATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGACCTATGCGGATGCCATTCGTTATAATGCTCGaa                   >  2:217139/1‑149 (MQ=255)                                                                                                                                aaCATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCAGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGaa                   >  1:574886/1‑149 (MQ=255)                                                                                                                                     catGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAAGGCct              >  1:258647/1‑149 (MQ=255)                                                                                                                                        gggACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGGTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAGTTCTCGAACGccacgt           >  2:774795/1‑145 (MQ=255)                                                                                                                                                 aCCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCt  >  1:673235/1‑149 (MQ=32)                                                                                                                                                     |                                                                                                                                                  AATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTT‑ATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCT  >  NC_000913/1467762‑1468054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.