New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3187424	NA (NA)	50 (1.140)	37/276	NT	100%	intergenic (+11/‑1)	insD1/yqiG	IS2 transposase TnpB/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
	?	NC_000913	= 3485937	0 (0.000)					intergenic (‑121/‑181)	yhfA/crp	OsmC family protein/cAMP‑activated global transcription factor, mediator of catabolite repression

AGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTACCCGTCGGCAAATATTCACTAAGCACTCTGATTA  >  NC_000913/3187292‑3187572                                                                                                                                     |                                                                                                                                                     agGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGtt                                                                                                                                      <  1:591526/149‑1 (MQ=255)   gCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTtgt                                                                                                                                    >  1:778361/1‑149 (MQ=255)        cGAGCATTATAACGAATGTCATTTGCATATTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTc                                                                                                                               >  2:576685/1‑149 (MQ=14)              ttATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTa                                                                                                                         >  1:556653/1‑149 (MQ=255)              ttATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTAATCATCATTGGATGTGCGTCAGCTTa                                                                                                                         >  1:465718/1‑149 (MQ=255)                    cGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGATGTGCGTCAGCCTATGCCGt                                                                                                                   >  2:668050/1‑149 (MQ=255)                    cGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCGTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTGGTGCGTCAGCTTATGCCga                                                                                                                   >  2:481173/1‑148 (MQ=255)                             tCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTTCGTCAGCTTATGCCGTTGAATTcaa                                                                                                          <  1:467481/149‑1 (MQ=255)                               cGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCCGCTTATGCGGTTGAATTcaaca                                                                                                        >  2:19490/1‑149 (MQ=255)                                   tAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGa                                                                                                    >  1:313009/1‑149 (MQ=255)                                   tAGTGCGCTGGGTTATCGCTCGCCAAGGAAATATCTGCGGCAGCGGGATTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAAGCCAGTTATCATCATTGGATGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGa                                                                                                    >  1:439674/1‑149 (MQ=21)                                           tGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCg                                                                                            >  1:626299/1‑149 (MQ=255)                                                  tggctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGa                                                                                     <  2:684068/147‑1 (MQ=255)                                                   cgctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGCTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGCTTGTGCGTCAGCTTATGCCGTTGCATTCAACAAAGATTTAATCGAAGCCGaa                                                                                    <  2:33180/149‑1 (MQ=255)                                                              ggAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGaaaa                                                                         >  1:73617/1‑149 (MQ=255)                                                              ggAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGACAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCCAAGCCGAAGATCGTGaaaa                                                                         >  1:74020/1‑149 (MQ=255)                                                               gAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAAc                                                                        >  1:80549/1‑149 (MQ=255)                                                                  tatCTGCGGCAGCGGGCGTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGtt                                                                     <  2:706308/149‑1 (MQ=255)                                                                           cAGCGGTCTGGTTATGGGTTAAGTTATAACAGATGACTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAAATGAAAATAGATTTAAGAAAAGCCGAAGATCGTGAAAACGTTAGCCTTTcc                                                            >  2:164007/1‑149 (MQ=25)                                                                           cAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAAACGAAGCCGAAGATCGTGAAAACGTTAACCTTTcc                                                            >  2:741247/1‑149 (MQ=255)                                                                             gCGGGCTTGGAATGGGTTAAGGGATAGCAGATGTCTGGAAATATAGGGGCGAATCCAGTGATCAGCATTGGGTGTGCGGCAGCTTATGCCGGTGAATGCAACAAAGATTTAATCGAAGCCGAAGATCGTGAATACGTTAACCTTTCCCa                                                          <  2:263055/149‑1 (MQ=37)                                                                                     tgaaTGGGTTAAGTGATAACAGATGTCTTGAAATATAGGGGCAAATCCAGTTATCAGCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGaaa                                                  <  2:179877/147‑1 (MQ=255)                                                                                     gTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCAGTTTGGTGTGAAAACGTTAACCTTTCCCAATTTGaaa                                                  <  2:556653/149‑1 (MQ=37)                                                                                      tAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAAc                                                 >  2:461403/1‑149 (MQ=255)                                                                                      tAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTGCCCAATTTGAAAc                                                 >  1:251936/1‑149 (MQ=255)                                                                                           ggTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCGACTTTGAAACTGAtt                                            >  1:418071/1‑148 (MQ=255)                                                                                           ggTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAActgctg                                            >  1:286750/1‑149 (MQ=255)                                                                                             ttAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGc                                          >  1:618690/1‑149 (MQ=255)                                                                                               aaGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCa                                        <  2:313009/149‑1 (MQ=255)                                                                                               aaGTGATAACACATGTCTGGAAATATAGGGGCGAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTTAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTCACCTTTCCCAATTTGAAACTGATGGCCa                                        <  2:439674/149‑1 (MQ=255)                                                                                                 gggATAACGGGTGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGGCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAGACGTTAACCTTTCCCAATTTGAAACTGATGGCCAAt                                      <  2:97861/147‑1 (MQ=255)                                                                                                  tGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAAtt                                     >  1:622079/1‑149 (MQ=255)                                                                                                     tAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCTACAAAGATTTAATCGAAGCCGAAGATCGTGATAACGTTAACCTTTCCCAATTTGAACCTGATGGCCAATTAcc                                  >  2:85449/1‑149 (MQ=255)                                                                                                     tAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATAACAAATATGATTACTACAGCTTATGCCTTGGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAACTTGAAACTGATGACCAATTAcc                                  >  1:379381/1‑149 (MQ=255)                                                                                                      aaCAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTAccc                                 >  1:538030/1‑149 (MQ=255)                                                                                                      aaCAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTAccc                                 >  1:750500/1‑149 (MQ=255)                                                                                                      aaCAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTAccc                                 >  2:240553/1‑149 (MQ=255)                                                                                                       acgaaTGTCTGGAACTATAGGGGCAAATCCAGTTATCCTCATTGGTTGTGCGTCAGCTTATGCCGTCGAATTCAACAAAGACTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTACCCg                                <  2:750444/145‑1 (MQ=255)                                                                                                                        taGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTACCCGTCGGCAAATATTCACTa               >  1:234077/1‑149 (MQ=255)                                                                                                                           gggCAAATCCAGTTATCATCATTGGGTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTACCCGTCGGCAAATATTCACTAAGc            >  1:391871/1‑149 (MQ=255)                                                                                                                              aaaaTTCAGTTATCATCATTGGTTGTGCATCAGCTTATGCCGTTGAATTCAACAAAGATTTAGTCGAAGCCGAAGATCGTGAAAACGTTAAACTTTCCCAATTTGAAACTGATGGCCAATTACCCGTCGCCAAATATTCACTACGCAct         >  2:232241/2‑149 (MQ=255)                                                                                                                                  tCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCCATTACCCGTCGGCAAATATTCACTAAGCACTCTGa     <  2:471998/149‑1 (MQ=255)                                                                                                                                  tCCAGTTATCATCATTGGGTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTACCCGTCGGCAAATATTCACTAAGCActctca     <  2:138865/149‑3 (MQ=255)                                                                                                                                   ccATTTATCATCATTGGTTGTGCGTCCGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCTGAAGATCGTGAAAACGTTAACGTTTCCCAATTTGAAACTGATGGCCAATTACCCGTCGGCAAATATTCACTAAGCACTCTGAt    <  2:652454/149‑1 (MQ=255)                                                                                                                                     aGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTACCCGTCGGCAAATATTCACTAAGCACTCTGATta  >  2:403391/1‑149 (MQ=255)                                                                                                                                     aGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTACCCGCCGGCAAATATTCACTAAGCACTATGATta  >  2:589992/1‑149 (MQ=255)                                                                                                                                     |                                                                                                                                                     AGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCAACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATTACCCGTCGGCAAATATTCACTAAGCACTCTGATTA  >  NC_000913/3187292‑3187572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.