New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4027517 =139 (3.280)4 (0.100) 4/262 NT 3.0% noncoding (197/281 nt) REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 4027549 = 129 (3.210)noncoding (229/281 nt) REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Frequency below/above cutoff threshold.

Only 100 of 153 total aligned reads displayed.

GGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCA  >  NC_000913/4027402‑4027696
                                                                                                                                                   |                                                                                                                                                   
 gCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTGATCGTGCCTACAAATAGGCCGGACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa                                                                                                                                                   >  2:68620/1‑149 (MQ=255)
      aggTGCATGATGCCTGATGCGACGCAGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGACGCGACGCTGGCGCCACTTATCAGGCCTACATTg                                                                                                                                              <  1:552620/148‑1 (MQ=17)
        tgtatcggtctgggtcagggtattgcgacggtgtttgagcgggtttaaccacttgccggatgcggcgtgaacgccttatccggtctaccgatccggcaccaatgtaggcctgatgcgacgctggcgcgtcttatcaggcCTACATTGGt                                                                                                                                            <  2:527262‑M2/10‑1 (MQ=255)
        gTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGt                                                                                                                                            >  2:423683/1‑149 (MQ=255)
           cATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGcc                                                                                                                                         >  1:363955/1‑149 (MQ=255)
            ggtttgCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATAGGGGccc                                                                                                                                        >  2:552620/5‑148 (MQ=11)
            atgatgCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCg                                                                                                                                        <  2:252054/149‑1 (MQ=255)
             tgatgaCTGAGGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCgg                                                                                                                                       <  2:193833/149‑1 (MQ=255)
              gatgCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGa                                                                                                                                      <  1:569988/149‑1 (MQ=255)
               atgCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGAt                                                                                                                                     <  2:200288/149‑1 (MQ=255)
                 gccggttGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCg                                                                                                                                   <  1:169460/143‑1 (MQ=255)
                  ccTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCgg                                                                                                                                  >  1:295360/1‑149 (MQ=255)
                   cggATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGt                                                                                                                                 <  1:256852/147‑1 (MQ=255)
                   cTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGt                                                                                                                                 <  1:453476/149‑1 (MQ=255)
                    tGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTa                                                                                                                                >  1:717567/1‑149 (MQ=255)
                    tGATGCGACGCTGTCGCGTCTTATCGTGCATACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTa                                                                                                                                <  1:176757/149‑1 (MQ=255)
                     gATGCGACGCTGTCGCGCCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGACAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAg                                                                                                                               <  2:670788/149‑1 (MQ=255)
                      aTGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGa                                                                                                                              <  1:269161/149‑1 (MQ=255)
                       tGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGAc                                                                                                                             <  1:511544/149‑1 (MQ=255)
                       tGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGAc                                                                                                                             <  1:396768/149‑1 (MQ=255)
                         cGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCg                                                                                                                           >  1:369188/1‑149 (MQ=255)
                          gACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTGCCTTGGTGCCGGATGGGTAGACCgg                                                                                                                          >  2:230015/1‑149 (MQ=255)
                           aCGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTTTTATCAGTGCTACATTGGTGCCGGATCGGTAGACCGGa                                                                                                                         <  2:163357/149‑1 (MQ=255)
                             gcgggcgcgGCGTAGCGTGCCTACAAAGGGGCGGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATa                                                                                                                       <  2:12067/144‑1 (MQ=18)
                              cTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATaa                                                                                                                      <  2:456643/149‑1 (MQ=255)
                                   gcgTCTTATCGTTCCTACAAATAGTCCTAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGTGGTGCATGATGCCTGATCCGACGCCGGCGCGTCTTATCAGGCCTACCTTGGTGCCGGATCGGTAGACCCGATAGGGCGt                                                                                                                 >  2:1150/1‑149 (MQ=17)
                                   gcgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGTGTTTACGACGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCTGGATCGGTAGACCGGATAAGGCGt                                                                                                                 <  1:556230/149‑1 (MQ=255)
                                   gcgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGt                                                                                                                 <  1:717607/149‑1 (MQ=255)
                                   gcgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGt                                                                                                                 >  2:694863/1‑149 (MQ=255)
                                    cgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGtt                                                                                                                <  1:647495/149‑1 (MQ=255)
                                     gTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCCGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTc                                                                                                               <  1:462822/149‑1 (MQ=255)
                                      tCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACTTTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCa                                                                                                              <  2:469206/149‑1 (MQ=255)
                                       cTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCAc                                                                                                             <  1:215867/149‑1 (MQ=255)
                                       cTTATCGTGCCTACAAACAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGGGACGCGTGCGCGAATATAGAAGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCAc                                                                                                             <  1:363445/149‑1 (MQ=17)
                                         tttgagcgggtttaaccacttgccggatgcggcgtgaacgccttatccggtctaccgatccggcaccaatgtaggcctgatgcgacgcgggcgcgtcttatcaggcCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCAcgc                                                                                                           <  1:112592‑M2/43‑1 (MQ=255)
                                             gTGCCTACAAATACTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCa                                                                                                       >  2:523715/1‑149 (MQ=255)
                                               gCCTACAAATAGTCCGACCCGTAGTCCTGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATc                                                                                                     <  1:507597/149‑1 (MQ=255)
                                                 cTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCg                                                                                                   <  1:382575/149‑1 (MQ=255)
                                                  tACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                  >  1:350541/1‑149 (MQ=255)
                                                  tACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCGGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                  <  1:633395/149‑1 (MQ=255)
                                                    cAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCGTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                >  1:190803/1‑149 (MQ=255)
                                                       aTAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCCAGt                                                                                             >  1:596548/1‑149 (MQ=255)
                                                          gTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGt                                                                                          >  2:614046/1‑149 (MQ=255)
                                                           tCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGtt                                                                                         <  1:613404/149‑1 (MQ=255)
                                                             cGACCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGGAGACCGGATAAGGCGTTCACGCCGCACCCGGCAGGTggcaca                                                                                       >  2:93482/1‑145 (MQ=21)
                                                             cGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTaa                                                                                       <  1:677273/149‑1 (MQ=255)
                                                              gAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCCGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTaaa                                                                                      >  1:688415/1‑149 (MQ=255)
                                                               aaCCGTAGGCCGGATAATGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAc                                                                                     <  1:323922/149‑1 (MQ=255)
                                                               aaCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAc                                                                                     <  2:287251/149‑1 (MQ=255)
                                                                   gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGc                                                                                 <  2:254409/149‑1 (MQ=255)
                                                                    tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTCAATTGAGGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCCCt                                                                                >  1:549302/1‑149 (MQ=18)
                                                                     aGGCCGGATAAGGCGGTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTc                                                                               <  2:279547/149‑1 (MQ=255)
                                                                      ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCgtttc                                                                              <  2:655418/149‑5 (MQ=255)
                                                                        gcgtgaacgccttatccggtctaccgatccggcaccaatgtagGCCTGATAAGACGCGCCCGCGTCGCATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCaaa                                                                            <  1:112592‑M1/106‑1 (MQ=255)
                                                                        cctgagaaGGCGTTTACGCCGCATCCGGCCATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCaaa                                                                            <  2:49486/143‑1 (MQ=255)
                                                                        ccGGATAAGGGGGTTACGCCGCATCCGGCAATTGGTGCATGATGCCTCATGCGACTCTGGCGCGTCTTATCAGTCCTACATTGGTGCCGGATCGGTAGATCGGATAAGGCGTTCACGTCGGAGCCGGCAAGTGGGTAAACCCGCTCaaa                                                                            <  1:555586/149‑1 (MQ=25)
                                                                        ccGGATAAGGCGTTTACGCCGCATCTGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCaaa                                                                            <  1:462213/149‑1 (MQ=255)
                                                                        ccGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCaaa                                                                            >  1:338574/1‑149 (MQ=255)
                                                                            aTAAGGCGTTTACGCCGCATCCGGCAAGTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACAcc                                                                        <  2:304827/149‑1 (MQ=255)
                                                                               aGGCTTTGACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGACCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTc                                                                     <  2:317837/149‑1 (MQ=255)
                                                                               aGGCGTTTACGCCGCATCCGGCAATTGATGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATCGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCCAGTGGTTAAACCCGCTCAAACACCGTc                                                                     <  1:524175/149‑1 (MQ=255)
                                                                                     ttACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCCACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATa                                                               <  1:154197/149‑1 (MQ=255)
                                                                                      tACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAc                                                              <  1:423683/149‑1 (MQ=255)
                                                                                       aCGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAcc                                                             <  1:547096/149‑1 (MQ=255)
                                                                                       aCGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAcc                                                             <  1:223551/149‑1 (MQ=255)
                                                                                          ccgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTg                                                          <  1:490475/149‑1 (MQ=255)
                                                                                           tctaccgatccggcaccaatgtagGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGa                                                         >  2:112592‑M1/25‑149 (MQ=255)
                                                                                           cgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGa                                                         >  1:578519/1‑149 (MQ=255)
                                                                                           cgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGa                                                         <  1:737230/149‑1 (MQ=255)
                                                                                            gcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTGCCCCGCCTAAGGATTTCATTCCTCATCCGGCAGGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGAc                                                        <  2:86066/149‑1 (MQ=25)
                                                                                            gcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGAc                                                        >  1:648900/1‑149 (MQ=255)
                                                                                             cATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGAAAAAAGTTAAACCCCTTCATACGCCTTCTCATTACCCTgtct                                                       <  2:745640/149‑4 (MQ=21)
                                                                                              atgcGGCCATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCCGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCCTCCGGCAAGTGGTTAAACCCGCTCAAACCCCGTCGCAATACCCTGAccc                                                      <  2:671085/146‑1 (MQ=37)
                                                                                               tCCGGCCATTGCGGCTTGAGGCCTGGTGCGCCTCTCGCGCCTCTTATCAGGCCTACCTAGGTGCCGGATCGGACACCCGCTTATATCTTCCCCTCCGCATAAAGCAAATTTTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCa                                                     <  2:722976/149‑1 (MQ=255)
                                                                                                ccGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAg                                                    <  1:190618/149‑1 (MQ=255)
                                                                                                 cGGCAATTGGTGCATGCTGTCTGATGCGACGCTGGCGCGTCTTATCAGGACTTCATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCCCGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGa                                                   <  1:143311/149‑1 (MQ=38)
                                                                                                 cGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGa                                                   >  1:309244/1‑149 (MQ=255)
                                                                                                 cGGAAATTGGTGCATGATGCCGGGTGCGCCGCTGGCGCGTCTTCTCGGGGGTACATTGGGGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGa                                                   <  1:143342/149‑1 (MQ=38)
                                                                                                    cAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCg                                                >  1:427127/1‑149 (MQ=255)
                                                                                                      aTTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGCCCGCAGAAGGCAAAAACGCCTCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGAt                                              <  1:177805/149‑1 (MQ=38)
                                                                                                      aTTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCCAGTGGTTAAACCAGCTCAAACACCATCGGAATACGCTGACCCAGACCGAt                                              >  2:326683/1‑149 (MQ=37)
                                                                                                       ttGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATa                                             <  2:299885/149‑1 (MQ=255)
                                                                                                           tGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTCCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGCTAcaca                                         >  1:517063/1‑149 (MQ=255)
                                                                                                                 atgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACAtcgtcg                                   >  1:539543/1‑149 (MQ=255)
                                                                                                                  tgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGc                                  <  1:729138/149‑1 (MQ=255)
                                                                                                                  tgCCTGATGCGACACTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGc                                  <  2:1351/149‑1 (MQ=255)
                                                                                                                    CCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCa                                >  1:238819‑M1/1‑149 (MQ=255)
                                                                                                                        ATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGAcc                            <  2:340980‑M1/149‑1 (MQ=255)
                                                                                                                        ATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGGAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACAACGTCGCCAGAcc                            <  2:346242‑M1/149‑1 (MQ=255)
                                                                                                                         TGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCa                           >  2:363955‑M1/1‑149 (MQ=255)
                                                                                                                           cGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCaaa                         <  1:744070/149‑1 (MQ=255)
                                                                                                                           agacgcgccagcgtcgcatcaggcCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCaaa                         <  1:527262‑M2/125‑1 (MQ=255)
                                                                                                                                cgggCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACCCCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGaa                    <  2:697738/147‑1 (MQ=255)
                                                                                                                                cTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGaa                    <  2:428934/149‑1 (MQ=255)
                                                                                                                                cTGGCGCGGCTCAGCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACCCCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGaa                    <  2:343780/149‑1 (MQ=255)
                                                                                                                                 tGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCCTCCGGCCAATGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCGGACCGATCCACATCGTCGCCAGACAAAACCGaca                   >  2:455213/1‑147 (MQ=38)
                                                                                                                                          ttATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCg          >  1:250170/1‑149 (MQ=255)
                                                                                                                                              caggcCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTcc      <  1:462388‑M2/144‑1 (MQ=255)
                                                                                                                                               aggcCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCa     <  1:460797‑M2/145‑1 (MQ=255)
                                                                                                                                                  cCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCa  <  1:411848‑M2/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCA  >  NC_000913/4027402‑4027696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.