New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 699431	55 (0.970)	4 (0.070)	4/280	8.4	6.4%	noncoding (7/98 nt)	RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3639230	64 (1.180)					noncoding (23/98 nt)	RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAAAACGTAATGGTGATTGTCGATTGGTGAAAAAAGGTCTGGTGTGAGGATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/699280‑699431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACAGGAACTGCAAGGAGAGCCAGTACAGCCCGCCGGAAAGCAGTACCGCAGCCG  <  NC_000913/3639230‑3639085                                                                                                                                                                                                                                                                                                            AAAAAACGTAATGGTGATTGTCGATTGGTGACACTCGGTCTTGTGTGAGGATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCG                                                                                                                                                       >  1:932342/1‑149                                 AAAAGGTCCGGTGTGAGGATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAC                                                                                                                       <  1:289663/149‑1                                                                                        TTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                                                                            <  1:438655/89‑1                                                                                        TTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                                                                            >  2:438655/1‑89                                                                                                                                                ATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACAGGAACTGCAAGGAGGGCCAGTACAGCCCGCCGGAAAGCAGTACCG        >  1:712846/1‑149                                                                                                                                                  GCCGGATAAGGCGTTCACGCCGCATCCGGCGTGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACAGGAACTGCAAGGAGAGCCAGTACAGCCCGCCGGAAAGCAGTACCGCA      >  1:494019/1‑149                                                                                                                                                  GCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACAGGAACTGCAAGGAGAGCCAGTACAGCCCGCCGGAAAGCAGTACCGCA      <  1:10111/149‑1                                                                                                                                                  GCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACAGGAACTGCAAGGAGAGCCAGTACAGCCCGCCGGAAAGCAGTACCGCA      >  2:486325/1‑149                                                                                                                                                  GCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTAGTGCGTACGATTACAGGAACTGCCAGGAGAGCCAGTACAGCCCGCCGGAAAGCAGTACCGCA      >  1:640850/1‑149                                                                                                                                                     GGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACAGGAACTGCAAGGAGAGCCAGTACAGCCCGCCGGAAAGCAGTACCGCAGCC   <  2:825075/149‑1                                                                                                                                                      GATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACAGGAACTGCAAGGAGAGCCAGTACAGCCCGCCGGAAAGCAGTACCGCAGCCG  >  2:816357/1‑149                                                                                                                                                                                                                                                                                                            AAAAAACGTAATGGTGATTGTCGATTGGTGAAAAAAGGTCTGGTGTGAGGATATATTTATTGATGAATCGATAATTTTTAGCGGGTTTTATTGAATGTTTATATTTTACGGGGGCCAAATTGCTGACAAAGTGCGATTTGTTCATGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/699280‑699431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCACTATGTCACAATCTGAAGCGGGCCAGCTGACCCGCTCGTTTTGGTGCGTACGATTACAGGAACTGCAAGGAGAGCCAGTACAGCCCGCCGGAAAGCAGTACCGCAGCCG  <  NC_000913/3639230‑3639085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.