New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3110452 =	62 (1.090)	8 (0.150)	6/278	7.2	12.4%	intergenic (+13/+136)	pheV/yghD	tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein
	?	NC_000913	3110473 =	54 (1.000)					intergenic (+34/+115)	pheV/yghD	tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTC  >  NC_000913/3110333‑3110621                                                                                                                                             |                                                                                                                                                     acgagGCGATTCAGGTTTAATGCGCCCCGTTGCCGGGCTTGCTCTGTGGGTGGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCtttt                                                                                                                                              <  1:72612/149‑1 (MQ=21)  cgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTg                                                                                                                                             <  2:835054/149‑1 (MQ=255)   gagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTgg                                                                                                                                            >  1:478103/1‑149 (MQ=255)    agGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGGTTTTGCTTTTGGa                                                                                                                                           >  2:178954/1‑149 (MQ=255)     ggCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGAt                                                                                                                                          <  1:419943/149‑1 (MQ=255)      gCGAATCAGGTTTAATGCGGCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATc                                                                                                                                         <  1:456748/149‑1 (MQ=255)           tCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACa                                                                                                                                    >  1:704152/1‑149 (MQ=255)                tttAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGGACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAAc                                                                                                                               >  1:72907/1‑149 (MQ=255)                    aTGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTc                                                                                                                           <  2:732717/149‑1 (MQ=255)                    aTGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTc                                                                                                                           <  2:732709/149‑1 (MQ=255)                     cgcgcCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCa                                                                                                                          <  1:408465/148‑1 (MQ=255)                      gcgcCCCTTTGTCGGGACAGCTCAGTCGGGAGAGCAGGGGATTGAAAATCCCCGTGCCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCAc                                                                                                                         <  1:35844/149‑1 (MQ=25)                      gcgcCCCGTTGCCCGGCTAGCTCAGTCGGTAGAACGGGGGCTTGACAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCAGGCACCCCTAATCCTTAAGAACCCGCCCACAGGACGCGCGCTTCCCTTTGGACCTGACAATAAcgggcca                                                                                                                         >  2:901510/1‑143 (MQ=17)                               tGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAAt                                                                                                                <  1:42041/149‑1 (MQ=255)                                         gCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATaa                                                                                                      >  2:889855/1‑149 (MQ=255)                                          cTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCGTATaaa                                                                                                     >  1:431901/1‑149 (MQ=255)                                          cTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTACTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCATGAAAAAAATTAGCTTATaaa                                                                                                     <  2:580962/149‑1 (MQ=255)                                           tCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAg                                                                                                    >  1:107367/1‑149 (MQ=255)                                           tCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAg                                                                                                    >  2:925595/1‑149 (MQ=255)                                           tCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTATTTGGTTCGATTCCGAGTACGGGCACAACTAATTCTTAAGAACCCGCCCACAAGGCGGGGTTTTGCTTTTGGATCTGACAATAACATTCACGAAGAGAAGTAGCTTGTAAAg                                                                                                    >  1:149469/1‑149 (MQ=25)                                                 ggTAGAGCAGGGGATGGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAACGTCTggg                                                                                              >  2:481213/1‑149 (MQ=255)                                                   tAGAGCAGGGGATTGAAAATCCCCGTGTCCTTTGTTCTATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTggggg                                                                                            >  1:601170/1‑149 (MQ=255)                                                        cAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTa                                                                                       >  1:787696/1‑149 (MQ=255)                                                        cAGCGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTa                                                                                       <  2:682581/149‑1 (MQ=255)                                                             gATTGAAAATCCCCGTGTCCTTGGTTCGTTTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGGTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACtctc                                                                                  <  1:441131/149‑1 (MQ=255)                                                             gATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACtctc                                                                                  <  1:178954/149‑1 (MQ=255)                                                               ttGAAGATCCTCGTGCCGTTGGTTCGATTCCGAGGCCGGGCACCACTAATTATTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTCTGGATCCGACAATAAAAAAAAAAAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGc                                                                                <  2:484298/149‑1 (MQ=255)                                                               ttGAAAATCCCCGTGTCCATGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTACGAACCCGCCCACAAGGCGGGATTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGAGGGAATAAGTATCGc                                                                                >  2:281378/1‑149 (MQ=38)                                                                  aaaaTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCAc                                                                             >  2:166424/1‑149 (MQ=255)                                                                  aaaaTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCAc                                                                             >  1:46243/1‑149 (MQ=255)                                                                    aacccccGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGCTCCTGACATCTGGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGt                                                                           <  1:455063/146‑1 (MQ=38)                                                                     aTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGtt                                                                          <  2:883166/149‑1 (MQ=255)                                                                     aTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGtt                                                                          >  2:587689/1‑149 (MQ=255)                                                                       ccccGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTGCTCCCGCCACGTTaa                                                                        >  1:1316/1‑149 (MQ=255)                                                                        cctgtgtCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAAc                                                                       <  2:742786/146‑1 (MQ=255)                                                                        cccGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGTATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAAc                                                                       <  2:405163/149‑1 (MQ=255)                                                                        cccGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGTAAAAAATTAGCTTATAAGGTCTGGGGGAAATCCTCTCGCCACCTTAAc                                                                       >  1:685014/1‑149 (MQ=39)                                                                         ccGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACg                                                                      >  1:409510/1‑149 (MQ=255)                                                                          cggtgccTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGCACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACga                                                                     <  1:299271/144‑1 (MQ=255)                                                                          cGTGTCCTGGGTTCGATCCCGAGTCCGGGCACTACTAATTCTTAAGAACCCGTCTACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCTCGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACga                                                                     <  2:522308/149‑1 (MQ=255)                                                                               ccTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTa                                                                <  1:774036/149‑1 (MQ=255)                                                                                    gTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCCCGTTAACGAGAGTAAtttt                                                           >  2:456499/1‑149 (MQ=255)                                                                                       cGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTAtt                                                        <  1:240500/149‑1 (MQ=255)                                                                                                          cacTAATTCTTAAGAACCCGCCCACCAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATAc                                     >  1:565960/1‑149 (MQ=255)                                                                                                          cacTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATAc                                     >  1:105834/1‑149 (MQ=255)                                                                                                          cacTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATATCCTGATAc                                     >  2:749500/1‑149 (MQ=255)                                                                                                                ttCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACCTTTcc                               <  2:820490/149‑1 (MQ=255)                                                                                                                       gaccctgCCCACAAGGCGGGTTTTCTCTGTTTGATCTGCCAATAACCTTCACGAAAGAAATTAGCTTATAAAGTCTGGTGGAATTATTCTCGCCACGTTAACGAGAGTAATTTTATTTATATTAATCTCCTGATACTTTACCCCCGTcc                        <  2:565905/143‑1 (MQ=255)                                                                                                                       gAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTcc                        <  2:654306/149‑1 (MQ=255)                                                                                                                        aaCCCGCCCACAAGTCGGGTTGTGGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTCGCTTATTAAGTCTGGGGGAATTACTCTCGCCACGTCAACGAGAGTAATTTTATTGATATTCATCTCGTGATACTTTACCCCCGTCCa                       <  2:694698/149‑1 (MQ=255)                                                                                                                        aaCCCGCCCACAAGGCGGGTTTTTTTTTTTTTTTCTGTCACTAGCCTGCACGAAAAAAATTAGCTTATCAAGTCTGGGGGCACTACTCTCGCCACTCTCACGAGAGTAATTTCAGTGCTCGTACTCTCCTGTTTCTTTATCTCGGTCCa                       >  2:135145/1‑149 (MQ=255)                                                                                                                            cGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCTCCGTCCaaaat                   >  2:921080/1‑147 (MQ=255)                                                                                                                               ccACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGACCCAAACTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCa                <  1:217559/149‑1 (MQ=255)                                                                                                                                cacaGGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAg               <  2:570838/149‑1 (MQ=255)                                                                                                                                 acaAGTCGGGTTTTTGCTTTTGGAGCGGACAAGAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCTCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGc              <  2:223133/149‑1 (MQ=255)                                                                                                                                       cGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGc        >  2:692093/1‑149 (MQ=255)                                                                                                                                             tttGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTc  <  1:851252/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                     ACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTC  >  NC_000913/3110333‑3110621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.